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Report for CCDS2327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2327.1 Public Homo sapiens 2 SATB2 24 110 108 CCDS HistoryNCBI Gene:23314Re-query CCDS DB by CCDS ID:2327.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2327.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260926.9 ENSP00000260926.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000260926.9Link to Ensembl Protein Viewer:ENSP00000260926.5Re-query CCDS DB by Nucleotide ID:ENST00000260926Re-query CCDS DB by Protein ID:ENSP00000260926
Original member Current member EBI ENST00000417098.6 ENSP00000401112.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000417098.6Link to Ensembl Protein Viewer:ENSP00000401112.1Re-query CCDS DB by Nucleotide ID:ENST00000417098Re-query CCDS DB by Protein ID:ENSP00000401112
Original member Current member EBI ENST00000457245.5 ENSP00000405420.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457245.5Link to Ensembl Protein Viewer:ENSP00000405420.1Re-query CCDS DB by Nucleotide ID:ENST00000457245Re-query CCDS DB by Protein ID:ENSP00000405420
Original member Current member EBI ENST00000700193.1 ENSP00000514854.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700193.1Link to Ensembl Protein Viewer:ENSP00000514854.1Re-query CCDS DB by Nucleotide ID:ENST00000700193Re-query CCDS DB by Protein ID:ENSP00000514854
Original member Current member NCBI NM_001172509.2 NP_001165980.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001172509.2Link to Protein Sequence:NP_001165980.1Re-query CCDS DB by Nucleotide ID:NM_001172509Re-query CCDS DB by Protein ID:NP_001165980Link to BLAST:NP_001165980.1
Original member Current member NCBI NM_001172517.1 NP_001165988.1 Accepted alive Link to Nucleotide Sequence:NM_001172517.1Link to Protein Sequence:NP_001165988.1Re-query CCDS DB by Nucleotide ID:NM_001172517Re-query CCDS DB by Protein ID:NP_001165988Link to BLAST:NP_001165988.1
Original member Current member NCBI NM_015265.4 NP_056080.1 Accepted alive Link to Nucleotide Sequence:NM_015265.4Link to Protein Sequence:NP_056080.1Re-query CCDS DB by Nucleotide ID:NM_015265Re-query CCDS DB by Protein ID:NP_056080Link to BLAST:NP_056080.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165980.1 733 Q9UPW6-1 733 100% 0 0
NP_001165988.1 733 Q9UPW6-1 733 100% 0 0
NP_056080.1 733 Q9UPW6-1 733 100% 0 0

Chromosomal Locations for CCDS 2327.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 199272211 199272672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 199308760 199308957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 199323803 199323958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 199328698 199328910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 199348701 199349173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 199368605 199368707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 199380364 199380487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 199381694 199381820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 199433338 199433514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 199455869 199456037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2202 nt):
ATGGAGCGGCGGAGCGAGAGCCCGTGTCTGCGGGACAGCCCCGACCGGCGGAGCGGCAGCCCGGACGTCA
AGGGGCCTCCCCCAGTGAAGGTGGCCCGGCTGGAGCAGAACGGCAGCCCCATGGGAGCCCGCGGGAGGCC
CAACGGCGCCGTGGCCAAGGCCGTGGGAGGTTTGATGATTCCTGTCTTTTGTGTCGTGGAGCAGTTGGAC
GGCTCTCTTGAATATGACAACAGAGAAGAACACGCCGAGTTTGTCCTGGTGCGGAAAGATGTGCTTTTTA
GCCAGCTGGTGGAGACTGCGCTCCTGGCCCTGGGGTATTCTCACAGCTCTGCGGCCCAGGCCCAAGGAAT
AATCAAGCTGGGAAGGTGGAACCCTCTCCCCCTCAGTTATGTGACAGATGCACCCGACGCGACAGTGGCC
GACATGCTACAAGATGTCTATCATGTTGTGACGTTGAAAATCCAATTACAAAGTTGTTCAAAGTTGGAAG
ACTTGCCTGCGGAGCAGTGGAACCATGCCACAGTCCGCAATGCCTTAAAGGAACTGCTCAAAGAGATGAA
CCAGAGCACATTAGCCAAAGAATGCCCTCTCTCCCAGAGTATGATTTCATCCATTGTAAATAGCACATAT
TATGCCAATGTGTCAGCAACCAAGTGCCAGGAGTTTGGGAGATGGTATAAAAAGTACAAGAAGATTAAAG
TGGAAAGAGTGGAACGAGAAAACCTTTCAGACTATTGTGTTCTGGGCCAGCGTCCAATGCATTTACCAAA
TATGAACCAGCTGGCATCCCTGGGGAAAACCAACGAACAGTCTCCTCACAGCCAAATTCACCACAGTACT
CCAATCCGAAACCAAGTGCCCGCATTACAGCCCATCATGAGCCCTGGTCTTCTTTCTCCCCAGCTTAGTC
CACAACTTGTAAGGCAACAAATAGCCATGGCCCATCTGATAAACCAACAGATTGCCGTTAGCCGGCTCCT
GGCTCACCAGCATCCTCAAGCCATCAACCAGCAGTTCCTGAACCATCCACCCATCCCCAGAGCAGTTAAG
CCAGAGCCAACCAACTCTTCCGTGGAAGTCTCTCCAGATATCTACCAGCAAGTCAGAGATGAGCTGAAGA
GGGCCAGTGTGTCCCAAGCTGTCTTTGCAAGAGTGGCATTCAACCGCACACAGGGATTGTTGTCTGAGAT
TCTGCGTAAGGAAGAAGACCCTCGGACAGCCTCTCAGTCTCTTCTAGTAAACCTGAGGGCCATGCAGAAT
TTCCTCAATCTGCCAGAAGTGGAGCGAGATCGCATCTACCAGGATGAGAGGGAGCGGAGCATGAATCCCA
ATGTGAGCATGGTCTCCTCGGCCTCCAGCAGTCCCAGCTCCTCCCGAACCCCTCAGGCCAAAACCTCGAC
ACCGACAACAGACCTCCCTATTAAGGTGGACGGCGCCAACATCAACATCACAGCTGCCATTTATGACGAG
ATCCAACAGGAGATGAAAAGGGCCAAGGTGTCTCAAGCCCTGTTTGCCAAAGTGGCTGCAAATAAAAGTC
AGGGCTGGCTGTGTGAACTGCTCCGCTGGAAGGAGAACCCAAGCCCAGAAAACCGCACCCTCTGGGAAAA
CCTCTGTACCATCCGTCGCTTCCTGAACCTTCCCCAGCATGAGAGGGATGTCATCTATGAGGAGGAGTCA
AGGCATCACCACAGCGAACGCATGCAACACGTGGTCCAGCTTCCCCCTGAGCCGGTGCAGGTACTTCATA
GACAGCAGTCTCAGCCAGCCAAGGAGAGTTCCCCTCCCAGAGAAGAAGCGCCTCCCCCACCTCCTCCGAC
TGAAGACAGTTGTGCCAAAAAGCCCCGGTCTCGCACAAAGATCTCCTTAGAAGCCCTGGGGATCCTCCAA
AGCTTTATTCATGATGTAGGCCTGTACCCAGACCAGGAAGCCATCCACACTCTTTCGGCTCAGCTGGATC
TCCCCAAACACACCATCATCAAGTTCTTCCAGAACCAGCGGTACCACGTGAAGCACCACGGGAAGCTGAA
AGAGCACCTGGGCTCCGCGGTGGACGTGGCTGAATATAAGGACGAGGAGCTGCTGACCGAGTCAGAGGAG
AACGACAGCGAGGAAGGCTCCGAGGAGATGTACAAAGTGGAGGCTGAGGAGGAAAATGCTGACAAAAGCA
AGGCAGCACCTGCCGAAATTGACCAGAGATAA

Translation (733 aa):
MERRSESPCLRDSPDRRSGSPDVKGPPPVKVARLEQNGSPMGARGRPNGAVAKAVGGLMIPVFCVVEQLD
GSLEYDNREEHAEFVLVRKDVLFSQLVETALLALGYSHSSAAQAQGIIKLGRWNPLPLSYVTDAPDATVA
DMLQDVYHVVTLKIQLQSCSKLEDLPAEQWNHATVRNALKELLKEMNQSTLAKECPLSQSMISSIVNSTY
YANVSATKCQEFGRWYKKYKKIKVERVERENLSDYCVLGQRPMHLPNMNQLASLGKTNEQSPHSQIHHST
PIRNQVPALQPIMSPGLLSPQLSPQLVRQQIAMAHLINQQIAVSRLLAHQHPQAINQQFLNHPPIPRAVK
PEPTNSSVEVSPDIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKEEDPRTASQSLLVNLRAMQN
FLNLPEVERDRIYQDERERSMNPNVSMVSSASSSPSSSRTPQAKTSTPTTDLPIKVDGANINITAAIYDE
IQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPENRTLWENLCTIRRFLNLPQHERDVIYEEES
RHHHSERMQHVVQLPPEPVQVLHRQQSQPAKESSPPREEAPPPPPPTEDSCAKKPRSRTKISLEALGILQ
SFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHHGKLKEHLGSAVDVAEYKDEELLTESEE
NDSEEGSEEMYKVEAEEENADKSKAAPAEIDQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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