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Report for CCDS27108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27108.1 Public Mus musculus 14 Thtpa 23 108 98 CCDS HistoryNCBI Gene:105663Re-query CCDS DB by CCDS ID:27108.1Re-query CCDS DB by GeneID:105663See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27108.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050575.8 ENSMUSP00000056026.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050575.8Link to Ensembl Protein Viewer:ENSMUSP00000056026.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000050575Re-query CCDS DB by Protein ID:ENSMUSP00000056026
Original member Current member NCBI NM_153083.5 NP_694723.1 Accepted alive Link to Nucleotide Sequence:NM_153083.5Link to Protein Sequence:NP_694723.1Re-query CCDS DB by Nucleotide ID:NM_153083Re-query CCDS DB by Protein ID:NP_694723Link to BLAST:NP_694723.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694723.1 224 Q8JZL3 224 100% 0 0

Chromosomal Locations for CCDS 27108.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55095460 55096006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55097380 55097507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGGCCCAGGGCTTGATTGAAGTGGAGCGAAAGTTCGCTCCAGGGCCTGACACGGAGGAAAGGCTGCAGG
AGTTGGGGGCCACCCTGGAGCACCGGGTCACCTTCCGAGACACATACTATGATACCTCTGAGTTAAGCCT
TATGCTGTCTGACCACTGGCTGCGACAACGAGAAGGTAGTGGATGGGAGCTCAAATGTCCTGGAGTAACA
GGTGTCTCAGGACCTCACAATGAGTATGTGGAAGTCACATCGGAAGCTGCGATTGTGGCCCAGCTCTTTG
AACTGCTCGGGTCTGGGGAGCAGAAGCCTGCAGGTGTGGCTGCTGTCCTGGGCTCGCTGAAGCTGCAGGA
GGTGGCTAGTTTTATTACTACGCGAAGCTCCTGGAAGCTGGCCTTATCTGGAGCCCATGGACAGGAGCCT
CAGCTCACAATAGACTTGGATTCAGCGGACTTCGGCTATGCTGTGGGTGAGGTAGAGGCCATGGTGCACG
AGAAGGCTGAAGTCCCGGCTGCCCTAGAGAAGATCATCACCGTCAGTAGCATGCTTGGAGTGCCAGCACA
GGAGGAGGCACCAGCCAAGCTCATGGTATACCTACAGCGCTTCAGGCCTCTGGACTATCAGCGCCTGCTA
GAAGCAGCCAGTTCTGGTGAGGCCACAGGGGACTCAGCATCCTGA

Translation (224 aa):
MAQGLIEVERKFAPGPDTEERLQELGATLEHRVTFRDTYYDTSELSLMLSDHWLRQREGSGWELKCPGVT
GVSGPHNEYVEVTSEAAIVAQLFELLGSGEQKPAGVAAVLGSLKLQEVASFITTRSSWKLALSGAHGQEP
QLTIDLDSADFGYAVGEVEAMVHEKAEVPAALEKIITVSSMLGVPAQEEAPAKLMVYLQRFRPLDYQRLL
EAASSGEATGDSAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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