NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40025.1 Public Mus musculus 7 Rsf1 23 108 98 CCDS HistoryNCBI Gene:233532Re-query CCDS DB by CCDS ID:40025.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40025.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107153.2 ENSMUSP00000102771.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107153.2Link to Ensembl Protein Viewer:ENSMUSP00000102771.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107153Re-query CCDS DB by Protein ID:ENSMUSP00000102771
Original member Current member NCBI NM_001081267.2 NP_001074736.1 Accepted alive Link to Nucleotide Sequence:NM_001081267.2Link to Protein Sequence:NP_001074736.1Re-query CCDS DB by Nucleotide ID:NM_001081267Re-query CCDS DB by Protein ID:NP_001074736Link to BLAST:NP_001074736.1

Chromosomal Locations for CCDS 40025.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 97579904 97580105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97616843 97616934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97636377 97636469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97639305 97639510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97653053 97653207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97660813 97662581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97664560 97664766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97669769 97669873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97670803 97670882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97674581 97674635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97676156 97676265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97677345 97677412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97678935 97679142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97680619 97680842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97681699 97681887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97685425 97685987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4326 nt):
ATGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCGATGGCTCCTCCGGGCTGCCCGGGTT
CGTGCCCCAACTTCGCCGTAGTCTGCTCCTTCTTGGAACGCTACGGGCCGCTGCTGGACCTGCCCGAGTT
GCCGTTCCCAGAGCTGGAGCGGGTGCTGCAGGCGCCGCCGCCAGACATCGGCAACGGAGAAGTACCAAAA
GAATTGGTGGAGCTGCATTTGAAGTTAATGAGGAAGATTGGCAAATCCGTTACAGCAGACAGATGGGAAA
AATACTTGATCAAGATCTGTCAAGAGTTTAACAGTACCTGGGCATGGGAGATGGAGAAGAAAGGCTATCT
TGAAATGAGTGTTGAATGCAAACTAGCACTCTTAAAGTATCTCTGTGAGTGTCAGTTTGATGACAATCTT
AAATTCAAGAATATAATTAATGAGGAGGATGCTGATACTATGCGTCTCCAGCCAATTGGGCGAGACAAAG
ATGGCCTCATGTATTGGTACCAGTTGGATCAAGACCATAATGTGAGAATGTACATAGAAGAACAAGATGA
TCAAGATGGCTCTTCTTGGAAATGCATTGTCAGAAATCGAAACGAGTTGGCTGAGACTCTTGCACTCCTG
AAAGCACAAATTGATCCTGTCCTATTGAAAAACTCGAGCCAACAGGAAGATTCTTCTCGGGAAAGCCCCA
CCCTAGAGGATGAGGAGACTAAGAAAGATGAAGAAACACCTAAACAAGAAGCATCAAAAGAAAATGAAAA
GACAGGAGCTGATGAGCGGTCAGTGGATTCTGGGAAGTGTTCTGCAGCCAGCGCTCTAGAAGAACCAGCT
GTGAAAACTGAGAAAGCAGATGAAAAGGAGCTTGCGAAACTGCCAGTCATTGTAAAGCTAGAAAAGCCTT
TGCCAGAAACTGAGGAAAAAAAGATTATCAGAGAGGAAAGTGATTCTTTCAAGGAAAATGTCAAACCCAT
TAAAGTAGAAGCAAAGGAATGCAGAGCGGACCCAAAAGATCTCAAAGGCAGCTTGGAGCGGCTGGGCTCG
CAGGAGCCTGAGCGAGCCGACTTTGGTAGCAACATCAAATCTCAAGACATCATAGAGAAATCTACTGAGG
AAACAGAGAAGCTTAAAAATGATCAGCAAGCCAAGATACCACTGAAGAAACGTGAAATTAAGCTGAGTGA
TGATTTTGACAGTCCAGTCAAAGGACCTTTGTGTAAGTCAGCTACTCCAACTAAAGAAGTTTTGAAAGAT
GACATAAAACAAGAGGAAGAGACTTGTAAACGGGTCTCTACCATCAGTGCTTTGAGTCATGAAGGGAAAC
AACTTGTGAATGGAGAGATTAATGATGACAAGGTAATTCCAAATTTTAAGACAGAACAAATGGAAATACA
GCTTTGTGATACAAAAGAAGATAGTGCTAGCATCCCTGCTAAGGATGGAAATGCCTGCATGGAGGGAAAT
GGTACGGAGTGCTTAAATTCTGTCATAACCAGCACAAAGACAAGTGAGCTTGAGAAAGAGGCCCCTCTAG
GGAAGGGTATAGACAGCTCTGTACCTGACATAGAGAGCCTCAGTCAGAAAGCAAGGTTAGAGGAGCCTGG
GCTTCTGAACATGGACATGCCTCTCGAACCTTCTGAGAAAGCCACGGATCTCTCTTTAAAACCCACTTTG
TCTGCCACAGAACCCTGCAGTACGAAAGTTGAAGAGAAGGCCCCCAGAAGTAAGAGTGAGAACCACACCC
CAGGCATAGAATGCCTGGAAAGGGTGGAGAAAGCCAAGAAGACCTCCATTGATAAGGACATCCAAAAATT
GAGTCCAATACCAGAAGAAGTTGTAAGGGGTGCTCTAGAGTCAGAAAAGTCAGGTCCTTGTGAAGTGGCT
GAAACTCCTCTCCCACTCTCGATGGCTGGGGCCAAGGAGAAACAGACCTCAGAAAAAAAGGATGTAGACT
GTAGTAGAGGTTCGAGTGAAAGTCAGTCCCTTGAAAATGCAAGCCCAGAAATTCTAAAAGAGGATTCTGA
GTCCTCGAGGGAGGAAGTGGCCAAACTGGACAATGCCCAGACCTCTGGCATGGAGGATACTTCTGAAACA
AAGGGCTCTGTGCAGAAAAACAAATTTAAATATAAGTTAGTTTCTGAAAGAAACAGTACTGCTTCAGAAA
ACACTGAGATCACCTCTGAAAGGAAGAAGGAAGGCATCAAGTTGACAATTAGGATATCAAGTCGGAAGAA
GAAGCCAGATTGCCCCCCACAAACTGTAGACTCAGAAAGCAAGGAAGAGAAGGCGGGCAAGGAAGAAGAG
AAAGCAAGTGTGGGTCGAACTTTAAGAAGGTCTCCAAGAATATCTAGACCCACAGCAAAAGTCGCTGAGA
TCAGAGTCCAGAAAGCCGATAAGAGAAGAGCTGACGGAGAAGATGGAGTGGAAGGGGAGCCGGCATCTTT
GCAAACAGCAGACAAGAAGGATCACTTGAAGAAAGCAGAGAAGGATACAAATTCTAAAGCAAGCAAGGTA
AAACCCAAAGGCAAAGTTCGATGGACTGGCTCTCGGACACGAGGCAGGTGGAAATACTCCAGCAATGACG
AAAGTGAAGGATCCGAGAGTGACAAATCCTCTGCAGCCTTGGAAGAGGAGGAAGGAAAGGAAGGTGAAGA
AGCGGTCCTTCCAGATGACGATGAACCTTGCAAAAAGTGTGGCCTTCCGAACCATCCAGAACTAATTCTT
CTGTGTGATTCTTGCGACAGTGGATACCATACTGCCTGCCTCCGCCCTCCGCTGATGATTATCCCTGATG
GAGAATGGTTCTGCCCTCCTTGCCAACATAAACTACTGTGTGAAAAGTTAGAAGAACAGCTGCAAGATTT
GGACGTCGCCTTAAAGAAGAAAGAGCGTGCAGAGCGAAGGAAAGAACGTTTGGTGTATGTTGGTATCAGT
ATTGAAAACATCATTCCTCCACAAGAGCCTGAGTTTTCTGAAGAGCAAGAAGAAAAGAAAAAAGATGCAA
AAAAATCCAAAGCAAATGCACTTGAAAGGAGATCAACAAGAACAAGGAAATGTATTAGCTACAGATTTGA
TGAATTTGATGAAGCAATTGATGAAGCTATAGAAGATGATATTAAAGAGGCTGATGGAGGAGGAGTTGGC
CGGGGGAAAGATATCTCCACCATCACAGGTCACCGTGGGAAAGACATTTCTACTATTTTGGATGAAGAAA
GAAAGGAAAATAAACGGCCCCAGAGGGCAGCTGCTGCTCGCAGGAAGAAACGCCGGCGACTTAATGATCT
TGACAGTGATAGCAACCTAGATGAAGAAGAGAGTGAGGATGAATTCAAGATCAGTGACGGATCTCAGGAT
GAGTTTGTTGTGTCTGATGAAAATCCAGATGAAAGTGAAGAAGAGCCACCATCCAATGAGGACAGCGACA
CTGACTTCTGCAGCCGAAGACTGAGGCGGCATCCTTCTCGGCCAATGAGGCAAAGCAGGCGTTTGCGGAG
AAAGACCCCAAAGAAGAAGTACTCCGATGACGATGAGGAGGAGGAAGAATCCGAGGAGAACAGCAGAGAC
TCTGAAAGTGACTTTAGCGATGATTTTAGTGATGATTTTGTAGAAACCCGGCGAAGGCGATCAAGAAGGA
ACCAGAAAAGACAAATTAACTATAAAGAAGATTCAGAAAGTGATGGTTCCCAGAAAAGTCTACGACGTGG
TAAAGAAATCAGGCGAGTTCACAAGCGCAGACTTTCCAGCTCAGAGAGTGAAGAGAGCTTTATGTCCAAG
AACTCTGAAGATGATGAGCTAACAAAAGAATCGAAGCGATCTGTTCGAAAACGGGGCCGAAGCACAGATG
ACTATTCAGAAGCAGATGAGGATGATGAAGAGGAAGGCAAACCATCCCGCAAGCGGCTACACCGGATTGA
GACGGACGAGGAGAGCTGTGACAATGCTCATGGGGACGCAGACCAGCCTGCCCGTGACAGCCAGCCCAGT
GCCCTGCCCTCAGAGCAGGAGAGCAGCAAGAAGCCCTACCGGATAGAGAGTGATGAGGAAGAAGACTTTG
AAAACAAAGTAGGGAGCCCATTGGACTACAGCCTAGTAGACTTGCCTTCCACCAATGGACAGAGCCCTGG
CAAGGCCATTGAGAACTTGATGGGCAAAGCAACTGAAAAGTCCCAAACCCCCAAGGACAATGGCACAGCC
AGTGCAAGTCTAGCCCCCAATGGGACAAGTGGTGGACAGGAGGTGGGGGCACCAGAGGAAGATGAAGATG
AGCTTTTGCGAGTGACTGATCTTGTTGATTACGTCTGTAACAGTGAACAGTTATAA

Translation (1441 aa):
MAAAAAAAAAAAAAAMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPPPDIGNGEVPK
ELVELHLKLMRKIGKSVTADRWEKYLIKICQEFNSTWAWEMEKKGYLEMSVECKLALLKYLCECQFDDNL
KFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQDDQDGSSWKCIVRNRNELAETLALL
KAQIDPVLLKNSSQQEDSSRESPTLEDEETKKDEETPKQEASKENEKTGADERSVDSGKCSAASALEEPA
VKTEKADEKELAKLPVIVKLEKPLPETEEKKIIREESDSFKENVKPIKVEAKECRADPKDLKGSLERLGS
QEPERADFGSNIKSQDIIEKSTEETEKLKNDQQAKIPLKKREIKLSDDFDSPVKGPLCKSATPTKEVLKD
DIKQEEETCKRVSTISALSHEGKQLVNGEINDDKVIPNFKTEQMEIQLCDTKEDSASIPAKDGNACMEGN
GTECLNSVITSTKTSELEKEAPLGKGIDSSVPDIESLSQKARLEEPGLLNMDMPLEPSEKATDLSLKPTL
SATEPCSTKVEEKAPRSKSENHTPGIECLERVEKAKKTSIDKDIQKLSPIPEEVVRGALESEKSGPCEVA
ETPLPLSMAGAKEKQTSEKKDVDCSRGSSESQSLENASPEILKEDSESSREEVAKLDNAQTSGMEDTSET
KGSVQKNKFKYKLVSERNSTASENTEITSERKKEGIKLTIRISSRKKKPDCPPQTVDSESKEEKAGKEEE
KASVGRTLRRSPRISRPTAKVAEIRVQKADKRRADGEDGVEGEPASLQTADKKDHLKKAEKDTNSKASKV
KPKGKVRWTGSRTRGRWKYSSNDESEGSESDKSSAALEEEEGKEGEEAVLPDDDEPCKKCGLPNHPELIL
LCDSCDSGYHTACLRPPLMIIPDGEWFCPPCQHKLLCEKLEEQLQDLDVALKKKERAERRKERLVYVGIS
IENIIPPQEPEFSEEQEEKKKDAKKSKANALERRSTRTRKCISYRFDEFDEAIDEAIEDDIKEADGGGVG
RGKDISTITGHRGKDISTILDEERKENKRPQRAAAARRKKRRRLNDLDSDSNLDEEESEDEFKISDGSQD
EFVVSDENPDESEEEPPSNEDSDTDFCSRRLRRHPSRPMRQSRRLRRKTPKKKYSDDDEEEEESEENSRD
SESDFSDDFSDDFVETRRRRSRRNQKRQINYKEDSESDGSQKSLRRGKEIRRVHKRRLSSSESEESFMSK
NSEDDELTKESKRSVRKRGRSTDDYSEADEDDEEEGKPSRKRLHRIETDEESCDNAHGDADQPARDSQPS
ALPSEQESSKKPYRIESDEEEDFENKVGSPLDYSLVDLPSTNGQSPGKAIENLMGKATEKSQTPKDNGTA
SASLAPNGTSGGQEVGAPEEDEDELLRVTDLVDYVCNSEQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH