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Report for CCDS22260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22260.1 Public Mus musculus 8 Fgl1 23 108 98 CCDS HistoryNCBI Gene:234199Re-query CCDS DB by CCDS ID:22260.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22260.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034003.4 ENSMUSP00000034003.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034003.4Link to Ensembl Protein Viewer:ENSMUSP00000034003.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034003Re-query CCDS DB by Protein ID:ENSMUSP00000034003
Original member Current member NCBI NM_145594.2 NP_663569.2 Accepted alive Link to Nucleotide Sequence:NM_145594.2Link to Protein Sequence:NP_663569.2Re-query CCDS DB by Nucleotide ID:NM_145594Re-query CCDS DB by Protein ID:NP_663569Link to BLAST:NP_663569.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663569.2 314 Q71KU9 314 99.3631% 0 2

Chromosomal Locations for CCDS 22260.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 41191521 41191680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41196958 41197145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41197314 41197402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41199652 41199749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41200445 41200604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41209697 41209883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41210427 41210489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGGAAAGATTTACAGCTTCGTCCTGGTCGCCATTGCTCTGATGATGGGAAGGGAAGGTTGGGCCCTCG
AGAGTGAGAACTGCTTGCGGGAGCAGGTGAGGCTCAGGGCTCAGGTGCACCAGCTTGAGACCCGGGTCAA
ACAACAACAGACCATGATTGCACAGCTCTTGCATGAGAAGGAAGTCCAGTTTCTGGATAAAGGATCGGAG
AACAGTTTCATTGACCTTGGAGGCAAGAAGCAGTATGCAGATTGTTCAGAGATTTACAATGACGGATTTA
AGCAGAGTGGATTTTACAAAATCAAACCTCTTCAGAGCCTGGCAGAATTCTCTGTTTATTGTGACATGTC
TGATGGAGGGGGATGGACTGTAATTCAGAGACGATCTGATGGCAGTGAGAACTTTAACAGGGGTTGGAAT
GACTATGAAAATGGCTTTGGAAACTTTGTCCAAAACAATGGCGAATACTGGCTGGGTAACAAAAACATTA
ACTTGCTAACTATTCAAGGAGACTACACTTTAAAAATCGACCTGACAGATTTTGAGAAAAACAGCAGCTT
CGCACAATACCAAAGTTTTAAAGTTGGTGATAAAAAGTCTTTTTATGAACTAAATATTGGAGAATATTCT
GGCACAGCTGGAGATTCCCTGTCAGGAACTTTTCATCCTGAAGTACAGTGGTGGGCTAGTCACCAAAGGA
TGAAGTTCAGCACGTGGGACAGAGATAACGACAATTACCAAGGAAACTGTGCTGAGGAAGAGCAGTCTGG
CTGGTGGTTTAACAGGTGTCACTCTGCAAACCTGAACGGTGTTTACTACCGTGGTTCCTACAGGGCAGAA
ACGGATAATGGTGTTGTGTGGTACACCTGGCATGGGTGGTGGTATTCCTTGAAATCTGTGGTTATGAAAA
TTAGGCCAAGTGATTTTATTCCAAATATTATTTAG

Translation (314 aa):
MGKIYSFVLVAIALMMGREGWALESENCLREQVRLRAQVHQLETRVKQQQTMIAQLLHEKEVQFLDKGSE
NSFIDLGGKKQYADCSEIYNDGFKQSGFYKIKPLQSLAEFSVYCDMSDGGGWTVIQRRSDGSENFNRGWN
DYENGFGNFVQNNGEYWLGNKNINLLTIQGDYTLKIDLTDFEKNSSFAQYQSFKVGDKKSFYELNIGEYS
GTAGDSLSGTFHPEVQWWASHQRMKFSTWDRDNDNYQGNCAEEEQSGWWFNRCHSANLNGVYYRGSYRAE
TDNGVVWYTWHGWWYSLKSVVMKIRPSDFIPNII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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