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Report for CCDS2624.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2624.1 Public Homo sapiens 3 CAPN7 24 110 108 CCDS HistoryNCBI Gene:23473Re-query CCDS DB by CCDS ID:2624.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2624.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253693.7 ENSP00000253693.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253693.7Link to Ensembl Protein Viewer:ENSP00000253693.2Re-query CCDS DB by Nucleotide ID:ENST00000253693Re-query CCDS DB by Protein ID:ENSP00000253693
Original member Current member NCBI NM_014296.3 NP_055111.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014296.3Link to Protein Sequence:NP_055111.1Re-query CCDS DB by Nucleotide ID:NM_014296Re-query CCDS DB by Protein ID:NP_055111Link to BLAST:NP_055111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055111.1 813 Q9Y6W3 813 100% 0 0

Chromosomal Locations for CCDS 2624.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 15206496 15206597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15212104 15212212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15217425 15217582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15218473 15218540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15220781 15220981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15223475 15223561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15227839 15227965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15228974 15229059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15230442 15230535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15232519 15232665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15233867 15233973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15235025 15235145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15240473 15240617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15240754 15240853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15241453 15241588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15242178 15242253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15245526 15245671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15246732 15246794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15247327 15247457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15250931 15251023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15251116 15251260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2442 nt):
ATGGACGCCACAGCACTGGAGCGGGACGCTGTGCAGTTCGCCCGTCTGGCGGTTCAGCGCGACCACGAAG
GCCGCTACTCCGAGGCGGTGTTTTATTACAAGGAAGCTGCACAAGCCTTAATTTATGCTGAGATGGCAGG
ATCAAGCCTAGAAAATATTCAAGAAAAAATAACTGAGTATCTGGAAAGAGTTCAAGCTCTACATTCAGCA
GTTCAGTCAAAGAGTGCTGATCCTTTGAAGTCAAAACATCAGTTGGACTTAGAGCGTGCTCATTTCCTTG
TTACACAAGCTTTTGATGAAGATGAAAAAGAGAATGTTGAAGATGCTATAGAATTGTACACAGAAGCTGT
GGATCTCTGTCTGAAAACATCTTATGAAACTGCTGATAAAGTCCTGCAAAATAAACTGAAACAGTTGGCT
CGACAGGCACTAGACAGAGCAGAAGCGCTGAGTGAGCCTTTGACCAAGCCAGTTGGCAAAATCAGTTCAA
CAAGTGTTAAGCCAAAGCCACCTCCAGTGAGAGCACATTTTCCACTGGGCGCTAATCCCTTCCTTGAAAG
ACCTCAGTCATTTATAAGTCCTCAGTCATGTGATGCACAAGGACAGAGATACACAGCAGAAGAAATAGAA
GTACTCAGGACAACATCAAAAATAAATGGTATAGAATATGTTCCTTTCATGAATGTTGACCTGAGAGAAC
GTTTTGCCTATCCAATGCCTTTCTGTGATAGATGGGGCAAGCTACCATTATCACCTAAACAAAAAACTAC
ATTTTCCAAGTGGGTACGACCAGAAGACCTCACCAACAATCCTACAATGATATATACTGTGTCCAGTTTT
AGCATAAAGCAGACAATAGTATCGGATTGCTCCTTTGTGGCATCACTGGCCATCAGTGCAGCTTATGAAA
GACGTTTTAATAAGAAGTTAATTACCGGCATAATTTACCCTCAAAACAAGGATGGTGAACCAGAATACAA
TCCATGTGGGAAGTATATGGTAAAACTTCACCTCAATGGTGTCCCAAGAAAGGTGATAATTGATGACCAG
TTACCTGTTGATCACAAGGGAGAATTGCTCTGTTCTTATTCCAACAACAAAAGTGAATTATGGGTTTCTC
TCATAGAAAAAGCATACATGAAAGTCATGGGAGGATATGATTTTCCAGGATCCAACTCCAATATTGATCT
TCATGCACTGACTGGCTGGATACCAGAAAGAATTGCTATGCATTCAGATAGCCAAACTTTCAGTAAGGAT
AATTCTTTCAGAATGCTTTATCAAAGATTTCACAAAGGAGATGTCCTCATCACTGCGTCAACTGGAATGA
TGACAGAAGCTGAAGGAGAGAAGTGGGGTCTGGTTCCCACACACGCATATGCTGTTTTGGATATTAGAGA
GTTCAAGGGGCTGCGATTTATCCAGTTGAAAAATCCTTGGAGTCATTTACGTTGGAAAGGAAGATACAGT
GAAAATGATGTAAAAAACTGGACTCCAGAGTTGCAAAAGTATTTAAACTTTGATCCCCGAACAGCTCAGA
AAATAGACAACGGAATATTTTGGATTTCCTGGGATGATCTCTGCCAGTATTATGATGTGATTTATTTGAG
TTGGAATCCAGGTCTTTTTAAAGAATCAACATGTATTCACAGTACTTGGGATGCTAAGCAAGGACCTGTG
AAAGATGCCTATAGCCTGGCCAACAACCCCCAGTACAAACTGGAGGTGCAGTGTCCACAGGGGGGTGCTG
CAGTTTGGGTTTTGCTTAGTAGACACATAACAGACAAGGATGATTTTGCGAATAATCGAGAATTTATCAC
AATGGTTGTATACAAGACTGATGGGAAAAAAGTTTATTACCCAGCTGACCCACCTCCATACATTGATGGA
ATTCGAATTAACAGCCCTCATTATTTGACTAAGATAAAGCTGACCACACCTGGCACCCATACCTTTACAT
TAGTGGTTTCTCAATATGAAAAACAGAACACAATCCATTACACGGTTCGGGTATATTCAGCATGCAGCTT
TACTTTTTCAAAGATTCCTTCACCATACACCTTATCAAAACGGATTAATGGAAAGTGGAGTGGTCAGAGT
GCTGGAGGATGTGGAAATTTCCAAGAGACTCACAAAAATAACCCCATCTACCAATTCCATATAGAAAAGA
CTGGGCCGTTACTGATTGAGCTACGAGGACCAAGGCAATATAGCGTTGGATTTGAGGTTGTAACAGTTTC
TACTCTAGGAGATCCTGGTCCCCATGGCTTTCTGAGGAAATCTAGTGGTGACTATAGGTGTGGGTTTTGC
TACCTGGAATTAGAAAATATACCTTCTGGGATCTTCAATATCATTCCTAGTACCTTTTTGCCTAAACAAG
AAGGACCTTTTTTCTTGGACTTTAATAGTATTATCCCCATCAAGATCACACAACTTCAGTGA

Translation (813 aa):
MDATALERDAVQFARLAVQRDHEGRYSEAVFYYKEAAQALIYAEMAGSSLENIQEKITEYLERVQALHSA
VQSKSADPLKSKHQLDLERAHFLVTQAFDEDEKENVEDAIELYTEAVDLCLKTSYETADKVLQNKLKQLA
RQALDRAEALSEPLTKPVGKISSTSVKPKPPPVRAHFPLGANPFLERPQSFISPQSCDAQGQRYTAEEIE
VLRTTSKINGIEYVPFMNVDLRERFAYPMPFCDRWGKLPLSPKQKTTFSKWVRPEDLTNNPTMIYTVSSF
SIKQTIVSDCSFVASLAISAAYERRFNKKLITGIIYPQNKDGEPEYNPCGKYMVKLHLNGVPRKVIIDDQ
LPVDHKGELLCSYSNNKSELWVSLIEKAYMKVMGGYDFPGSNSNIDLHALTGWIPERIAMHSDSQTFSKD
NSFRMLYQRFHKGDVLITASTGMMTEAEGEKWGLVPTHAYAVLDIREFKGLRFIQLKNPWSHLRWKGRYS
ENDVKNWTPELQKYLNFDPRTAQKIDNGIFWISWDDLCQYYDVIYLSWNPGLFKESTCIHSTWDAKQGPV
KDAYSLANNPQYKLEVQCPQGGAAVWVLLSRHITDKDDFANNREFITMVVYKTDGKKVYYPADPPPYIDG
IRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTVRVYSACSFTFSKIPSPYTLSKRINGKWSGQS
AGGCGNFQETHKNNPIYQFHIEKTGPLLIELRGPRQYSVGFEVVTVSTLGDPGPHGFLRKSSGDYRCGFC
YLELENIPSGIFNIIPSTFLPKQEGPFFLDFNSIIPIKITQLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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