NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
478.1 Public Homo sapiens 1 EBNA1BP2 24 110 108 CCDS HistoryNCBI Gene:10969Re-query CCDS DB by CCDS ID:478.1Re-query CCDS DB by GeneID:10969See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 478.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000236051.3 ENSP00000236051.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000236051.3Link to Ensembl Protein Viewer:ENSP00000236051.2Re-query CCDS DB by Nucleotide ID:ENST00000236051Re-query CCDS DB by Protein ID:ENSP00000236051
Original member Current member NCBI NM_006824.3 NP_006815.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006824.3Link to Protein Sequence:NP_006815.2Re-query CCDS DB by Nucleotide ID:NM_006824Re-query CCDS DB by Protein ID:NP_006815Link to BLAST:NP_006815.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006815.2 306 Q99848 306 100% 0 0

Chromosomal Locations for CCDS 478.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 43164443 43164493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43164643 43164805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43166826 43166919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43167160 43167235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43168939 43169028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43170756 43170879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43171479 43171651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43171886 43171969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43172053 43172118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGACACTCCCCCGCTCTCGGATTCGGAGTCGGAATCCGATGAATCCCTTGTCACAGACAGAGAGTTGC
AGGATGCGTTTTCCCGAGGGCTTCTGAAGCCAGGCCTCAATGTCGTGCTAGAGGGGCCGAAGAAGGCCGT
GAACGACGTGAATGGCCTGAAGCAATGTTTGGCAGAATTCAAGCGGGATCTGGAATGGGTTGAAAGGCTC
GATGTGACACTGGGTCCGGTACCGGAGATCGGTGGATCTGAGGCGCCAGCACCTCAGAACAAGGACCAGA
AAGCTGTTGATCCAGAAGACGACTTCCAGCGAGAGATGAGTTTCTATCGCCAAGCCCAGGCCGCAGTGCT
TGCAGTCTTACCCCGCCTCCATCAGCTCAAAGTCCCTACGAAGCGACCCACTGATTATTTTGCGGAAATG
GCCAAATCTGATCTGCAGATGCAGAAGATTCGACAGAAGCTGCAGACTAAACAGGCTGCCATGGAGAGGT
CTGAAAAAGCTAAGCAACTGCGAGCACTTAGGAAATACGGGAAGAAGGTGCAAACGGAGGTTCTTCAGAA
GAGGCAGCAGGAGAAAGCCCATATGATGAATGCTATTAAGAAATATCAGAAAGGCTTCTCTGATAAACTG
GATTTCCTTGAGGGAGATCAGAAACCTCTGGCACAGCGCAAGAAGGCAGGAGCCAAAGGCCAGCAGATGA
GGAAGGGGCCCAGTGCTAAACGACGGTATAAAAACCAGAAGTTTGGTTTTGGTGGAAAGAAGAAAGGCTC
AAAGTGGAACACTCGGGAGAGCTATGATGATGTATCTAGCTTCCGGGCCAAGACAGCTCATGGCAGAGGC
CTCAAGAGGCCTGGCAAGAAAGGGTCAAATAAGAGACCTGGAAAACGAACAAGAGAGAAGATGAAGAACA
GAACACACTAA

Translation (306 aa):
MDTPPLSDSESESDESLVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLAEFKRDLEWVERL
DVTLGPVPEIGGSEAPAPQNKDQKAVDPEDDFQREMSFYRQAQAAVLAVLPRLHQLKVPTKRPTDYFAEM
AKSDLQMQKIRQKLQTKQAAMERSEKAKQLRALRKYGKKVQTEVLQKRQQEKAHMMNAIKKYQKGFSDKL
DFLEGDQKPLAQRKKAGAKGQQMRKGPSAKRRYKNQKFGFGGKKKGSKWNTRESYDDVSSFRAKTAHGRG
LKRPGKKGSNKRPGKRTREKMKNRTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH