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Report for CCDS15843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15843.1 Public Mus musculus 2 Gfi1b 23 108 98 CCDS HistoryNCBI Gene:14582Re-query CCDS DB by CCDS ID:15843.1Re-query CCDS DB by GeneID:14582See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15843.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028156.7 ENSMUSP00000028156.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028156.7Link to Ensembl Protein Viewer:ENSMUSP00000028156.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028156Re-query CCDS DB by Protein ID:ENSMUSP00000028156
Original member NCBI NM_008114.3 NP_032140.1 Updated not alive Link to Nucleotide Sequence:NM_008114.3Link to Protein Sequence:NP_032140.1Re-query CCDS DB by Nucleotide ID:NM_008114Re-query CCDS DB by Protein ID:NP_032140
Current member NCBI NM_008114.4 NP_032140.1 Accepted alive Link to Nucleotide Sequence:NM_008114.4Link to Protein Sequence:NP_032140.1Re-query CCDS DB by Nucleotide ID:NM_008114Re-query CCDS DB by Protein ID:NP_032140Link to BLAST:NP_032140.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032140.1 330 O70237 330 100% 0 0

Chromosomal Locations for CCDS 15843.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 28610025 28610203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28611419 28611584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28612781 28612918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28613677 28613948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28614755 28614892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28615277 28615376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGCCACGGTCCTTTCTAGTGAAGAGTAAGAAGGCACACACTTACCACCAGCCCCGGGCACAGGGTGATG
AGCTGGTCTGGCCTCCTGCTGTAATTCCTGTGGCAAAAGAGCATAGCCAGAGTGCCAGCCCTCTTCTCAG
CACACCGCTTCCAAGCCAGACCTTGGACTGGAACACAATCAAACAGGAGCGGGAGATGTTGCTGAACCAG
AGCCTTCCCAAGATGGCCTCAGCCCCAGAGGGGCCTCTCGTGACACCCCAACCCCAGGATGGGGAATCAC
CACTCTCTGAGTCACCCCCTTTCTACAAGCCCAGCTTCTCCTGGGATACCTTGGCCTCCTCCTACAGCCA
CAGCTACACACAGACCCCCTCCACCATGCAGTCCGCCTTCCTGGAGCGCTCCGTGAGGCTGTACGGCAGC
CCCCTCGTGCCCAGCACAGAGTCTCCCTTGGACTTCCGCCTCCGCTACTCTCCAGGCATGGACACTTACC
ACTGTGTCAAGTGCAACAAGGTGTTCTCCACCCCTCATGGGCTAGAAGTGCATGTCCGCCGCTCTCACAG
CGGAACCCGGCCCTTTGCCTGTGATGTCTGTGGCAAAACCTTTGGCCACGCTGTGAGCTTGGAGCAGCAT
ACTCACGTCCACTCACAGGAGCGAAGCTTCGAGTGCCGGATGTGTGGCAAAGCCTTCAAGCGTTCATCCA
CCCTGTCCACCCACCTGCTCATCCACTCGGACACTCGGCCCTACCCCTGCCAGTTCTGTGGGAAGCGCTT
CCACCAGAAGTCGGACATGAAGAAACACACCTACATCCACACAGGTGAGAAGCCCCACAAGTGCCAGGTG
TGTGGGAAAGCCTTCAGCCAGAGCTCCAACCTCATCACCCACAGCCGCAAGCACACAGGCTTCAAGCCGT
TCAGCTGTGAGCTGTGCACCAAGGGCTTCCAGCGCAAGGTGGACCTGCGACGTCACCGTGAGAGTCAACA
CAATCTCAAGTGA

Translation (330 aa):
MPRSFLVKSKKAHTYHQPRAQGDELVWPPAVIPVAKEHSQSASPLLSTPLPSQTLDWNTIKQEREMLLNQ
SLPKMASAPEGPLVTPQPQDGESPLSESPPFYKPSFSWDTLASSYSHSYTQTPSTMQSAFLERSVRLYGS
PLVPSTESPLDFRLRYSPGMDTYHCVKCNKVFSTPHGLEVHVRRSHSGTRPFACDVCGKTFGHAVSLEQH
THVHSQERSFECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQV
CGKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQHNLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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