NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27486.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27486.2 Public Mus musculus 15 Fam83a 23 108 98 CCDS HistoryNCBI Gene:239463Re-query CCDS DB by CCDS ID:27486.2See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 27486.1
The coding region has been updated to extend the C-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27486.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160942.7 ENSMUSP00000125464.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160942.7Link to Ensembl Protein Viewer:ENSMUSP00000125464.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160942Re-query CCDS DB by Protein ID:ENSMUSP00000125464
Original member Current member NCBI NM_173862.2 NP_776287.2 Accepted alive Link to Nucleotide Sequence:NM_173862.2Link to Protein Sequence:NP_776287.2Re-query CCDS DB by Nucleotide ID:NM_173862Re-query CCDS DB by Protein ID:NP_776287Link to BLAST:NP_776287.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776287.2 436 Q8K2P2-1 436 100% 0 0

Chromosomal Locations for CCDS 27486.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 57986062 57986541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57992907 57993074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57995214 57995338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58009550 58010087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGAGTCGGTCAAGGCATGTGGGCAAGATCCGGAAACGTCTGGAAGATGTCAAGAACCAGTGGACCCGGC
CAGCCAGAGCTGACTTCAGTGATAATGAGAGCGCCCGGCTGGCCACAGATGCCCTCTTGGATGGCGGTCC
AGAGGCTTACTGGCGCGCCCTCAGTCAGGAAGGAGAGGTAGACTTCCTGTCCTCAGCGGAGGCCCAGTAC
ATCCAGGCCCAGGCCAAGGAGCCCCCTGATGCCCCCGATTCTGCCGGAGGGGCTGAGTCAGGACCCAGAG
GACTGGACTCCTGCTCTTTACAATCAGGTACCTACTTCCCTGTGGCTTCGGAAGGCAGTGAGCCAGCTCT
GCTGCACACCTGGACTTTGGCTGAGAAGCCCTACCTGAAGGAAAAGTCCAGTGCCACCATCTACTTCCAA
ATGGACAAACACAACAACATCAGAGATTTGGTCCGCCGCTGCATCTCCCGGGCCAGCCAGGTCCTGGCCA
TTCTGATGGATGTGTTCACGGATGTGGAGATCCTTTGTGACATTCTAGAGGCAGCCAACAAGCGCGGGGT
ATTCGTCTGTGTGCTTCTGGACCAGGGCGGGGTGAAGCTCTTCCAGGAGATGTGTGACAAAGTCCAGATC
TCTGATATTCATCTCAAGAACATCTCCATCAGGAGTGTGGAAGGGGAGGTGTATTGTGCCAAGTCAGGCA
GGAAATTTGCCGGCCAAATCCAAGAGAAGTTCATCATCTCAGACTGGAGGTTTGTCTTATCCGGATCATA
CAGCTTCTCTTGGCTCTGTGGACACGTGCACAGGAACATCCTCTCCAAGTTCACGGGGCAAGCGGTGGAG
CTGTTTGATGAGGAATTTCGACGCCTCTACGCCTCCTCCAAGCCCCTGATGGGTCTGAAGTCCCCGAGGC
TGGTCGCCCCGTTCCAACCCAACAAGGGCCCAGAAGCTCCCAATGGCCGCCTCAGCGGCACCAGTGACTC
TGCCAGTGACCGCACCTCCTCCAACCCCTTCAGCAGCCTGTCGACCGGCAGCAATGCCCACAACCAGAGT
CTGTCCACATCTTCAGGGCCCAGCAGTCCCCTGGCCCCCATCCCACCCACGGTTCCAAGGCTGCAGCCCT
ATCACAGCACCCGGAGAGCCGTGGCCCCACAGCCTCTCTTGGTCCCCATGAGGCCCCATGAGGGAGCACC
AGCTCCCTACAGCAGCCTCATGGCCTACAGGCCCACCCGGCTGCAGCTGCAGCAACTCGGCCTGGTGCCC
AGGGTGACTCACCCCTGGAGGCCTTTTCTACAGGCCTTGCCTCATTTTTAA

Translation (436 aa):
MSRSRHVGKIRKRLEDVKNQWTRPARADFSDNESARLATDALLDGGPEAYWRALSQEGEVDFLSSAEAQY
IQAQAKEPPDAPDSAGGAESGPRGLDSCSLQSGTYFPVASEGSEPALLHTWTLAEKPYLKEKSSATIYFQ
MDKHNNIRDLVRRCISRASQVLAILMDVFTDVEILCDILEAANKRGVFVCVLLDQGGVKLFQEMCDKVQI
SDIHLKNISIRSVEGEVYCAKSGRKFAGQIQEKFIISDWRFVLSGSYSFSWLCGHVHRNILSKFTGQAVE
LFDEEFRRLYASSKPLMGLKSPRLVAPFQPNKGPEAPNGRLSGTSDSASDRTSSNPFSSLSTGSNAHNQS
LSTSSGPSSPLAPIPPTVPRLQPYHSTRRAVAPQPLLVPMRPHEGAPAPYSSLMAYRPTRLQLQQLGLVP
RVTHPWRPFLQALPHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH