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Report for CCDS25207.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25207.1 Public Mus musculus 11 Smg8 23 108 98 CCDS HistoryNCBI Gene:74133Re-query CCDS DB by CCDS ID:25207.1Re-query CCDS DB by GeneID:74133See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25207.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020801.13 ENSMUSP00000020801.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020801.13Link to Ensembl Protein Viewer:ENSMUSP00000020801.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020801Re-query CCDS DB by Protein ID:ENSMUSP00000020801
Original member Current member NCBI NM_024262.1 NP_077224.1 Accepted alive Link to Nucleotide Sequence:NM_024262.1Link to Protein Sequence:NP_077224.1Re-query CCDS DB by Nucleotide ID:NM_024262Re-query CCDS DB by Protein ID:NP_077224Link to BLAST:NP_077224.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077224.1 991 Q8VE18 991 100% 0 0

Chromosomal Locations for CCDS 25207.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87077953 87078150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87080166 87081038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87083600 87083745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87084995 87086753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2976 nt):
ATGGCGGGGCCGGTCAGCTTGCGCGAGCTGCTCATGGGGGCGTCGGCCTGGCTGGGCTCTGAGAGTCCTG
GAGGCCCCTCCGCTGAAGGCGGGGGAAACGCGGCTGGCACGCCCGAGCCCCCGTGGAGGGAGGATGAGAT
CTGCGTGGTGGGAATCTTCGGCAAGACGGCTCTGCGCCTCAACTCCGAGAAGTTCTCTCTGGTGAATACT
GTGTGCGATCGACAGGTTTTCCCACTCTTTCACCATCAGGATCCTGGAGATCCAGGAACTGGAATCAAGA
CCAAAGCTGTCTCTGTCGGAGAGGCGGGAGGAGCCGGAGACCCCGGGGCTGCAGCCGGGGATTCACTTCG
CGGAGGTATGGCTACGGCGGAAGGTAACCGAGCTGAGCCAGGTCCCCAGGACTTCAGTCTTTTGCAGGCC
TATTACAATCAGGAAAGCAAAGTTCTGTATCTTATTCTCACTTCCATCTGTGACAACTCACAGCTTCTGC
GTGCTTGTCGGGCCCTCCAGAGCGGTGAAGCCGGAGGGGGCCTCTCTTTACCTCATGCAGAAACACACGA
GTTCTGGAAGCATCAGGAGAAGTTACAGTGTCTCAGCCTCCTTTACCTCTTCTCTGTCTGTCATATCTTG
CTCCTGGTCCATCCGACGTGTTCCTTTGACATCACTTATGATCGTGTATTCAGAGCCCTGGATGGACTGA
GACAGAAAGTACTACCCCTCCTCAAAACAGCCATTAAGGATTGCCCAGTTGGCAAAGACTGGAAGTTAAA
CTGCCGACCTTGCCCACCTAGACTCCTCTTCCTCTTTCAACTCAATGGGGCCCTTAAGGTGGAACCGCCT
CGGAGCCAGGATACAGCTCATCCAGATAAACCCAAGAAGCACTCTCCCAAAAGAAGGCTGCAGCATGCCC
TGGAGGACCAGATCTATAGAATCTTTCGCAAGAGTCGAGTCTTGACTAATCAGAGTATCAACTGCCTCTT
TACGGTACCTGCCAACCAAGCTTTTGTGTACATAGTCCCCGGAAGCCAGGAGGAGGACCCAATTGGCATG
TTGCTGGACCAGCTTAGGAGCCATTGTACCGTGAAAGACCCAGAATCGTTGTTGGTGCCCGCACCCCTTT
CTGGACCTAGGCGGTACCAAGCGATGAGACAGCACAGCCGCCAACAGCTCTCCTTCCACATTGATAGCAG
CACCTCGAGTTCTTCAGGCCAGCTAGTGGATTTCACTCTTCGAGAATTCCTGTGGCAGCACGTGGAGCTG
GTCCTAAGCAAAAAAGGTTTTGATGACAGTGTGGGCAGGAACCCACAGCCTTCCCATTTTGAACTGCCCA
CTTACCAGAAGTGGATCTCTGCAGCAGCAAAGTTGTATGAAGTGGCTATCGATGGGAAGGAAGAGGACTT
GGGCTCCCCCACTGGGGAGCTAACATCTAAGATTTTAAGCAGTATTAAAGTCTTAGAAGGGTTTTTGGAT
ATAGACACAAAATTCTCGGAAAACCGGTGCCAAAAAGCTTTACCCATGGCTCATAGTGCCTACCAGTCAA
ACTTGCCGCATAATTACACCATGACAGTCCATAAGAATCAGCTTGCTCAGGCTCTTCGGGTATACAGTCA
GCATGCTCGAGGTCCAGCCTTTCACAAATATGCCATGCAATTACACGAAGACTGCTACAAATTTTGGAGC
AATGGCCATCAGCTGTGCGAAGAGAGGAGCTTGACTGACCAACACTGTGTCCACAAATTTCATTCCTTAC
CTAAATCAGGAGAAAAGCCAGAGGCAGATAGGAACCCTCCTGTGCTCTACCACAATAGCCGAGCCCGATC
CACCGGAGCCTGCAACTGCGGAAGGAAGCAGGCACCTCGAGACGACCCCTTCGATATCAAGGCTGCTAAC
TATGACTTTTACCAGCTTCTGGAAGAAAAATGTTGTGGGAAATTGGATCATATCAATTTCCCTGTATTTG
AGCCAAGTACTCCAGATCCCGCTCCTGCTAAAAATGAACCCTCTCCTGCCCCGCCAGACTCGGACGCCGA
GAAACTGAAGGAGAAAGAACCTCAAACCCAAGGAGAGAGCACAAGCCTCAGCTTAGCTTTGAGCTTGGGC
CAGTCAACAGATAGCCTAGGTACCTACCCCGCTGATCCACAGGCAGGAGGAGACAACCCAGAAGTCCACG
GGCAAGGAGAAGGAAAGTCTGAGAAGAGACCAAACTTGGTTGACCGTCAGGCATCCACAGTTGAATATCT
CCCAGGCATGCTACATTCAAATTGCCCCAAAGGTCTCCTACCCAAATTCTCCAGCTGGTCTTTGGTTAAA
CTAGGCCCAGCCAAGTCTTACAACTTTCATACAGGTTTGGACCAACAGGGCTTCGTTCCAGGAACAAACT
ATCTTATGCCTTGGGACATTGTCATCAGGACTAGAGCTGAAGATGAAGGAGACTTAGACACGAACTCCTG
GCCTGCTCCAAATAAAGCTATTCCTGGGAAGAGAAGTGCAGTTGTGATGGGCAGAGGAAGGCGGAGGGAT
GACATAGCTCGAGCCTTTGTTGGCTTTGAGTATGAAGACTCTCGAGGTCGGAGGTTCATGTGCTCAGGGC
CTGACAAAGTAATGAAAGTGATGGGAAGTGGACCCAAGGAGTCGGCTTTAAAAGCCCTCAACAGTGACAT
GCCCCTGTACATCCTGTCCTCGTCGCAGGGCAGAGGGCTGAAGCCACATTATGCTCAACTTATGAGGCTT
TTTGTTGTGGTTCCTGATGCTCCTTTGCAGATAATACTGATGCCTCAGGTTCAACCAGGCCCACCACCAT
GTCCAGTATTTTACCCAGAAAAACAAGAAATCACTCTCCCACCTGATGGCCTTTGGGTCTTGAGATTTCC
TTATGCCTATGTGACTGAGAGAGGACCTTGTTTCCCTCCCAAGGAGAATGTGCAGCTCATGAGCTACAAG
GTGCTCCGAGGAGTCCTCAAAGCAGTTACACAATGA

Translation (991 aa):
MAGPVSLRELLMGASAWLGSESPGGPSAEGGGNAAGTPEPPWREDEICVVGIFGKTALRLNSEKFSLVNT
VCDRQVFPLFHHQDPGDPGTGIKTKAVSVGEAGGAGDPGAAAGDSLRGGMATAEGNRAEPGPQDFSLLQA
YYNQESKVLYLILTSICDNSQLLRACRALQSGEAGGGLSLPHAETHEFWKHQEKLQCLSLLYLFSVCHIL
LLVHPTCSFDITYDRVFRALDGLRQKVLPLLKTAIKDCPVGKDWKLNCRPCPPRLLFLFQLNGALKVEPP
RSQDTAHPDKPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDPIGM
LLDQLRSHCTVKDPESLLVPAPLSGPRRYQAMRQHSRQQLSFHIDSSTSSSSGQLVDFTLREFLWQHVEL
VLSKKGFDDSVGRNPQPSHFELPTYQKWISAAAKLYEVAIDGKEEDLGSPTGELTSKILSSIKVLEGFLD
IDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHKYAMQLHEDCYKFWS
NGHQLCEERSLTDQHCVHKFHSLPKSGEKPEADRNPPVLYHNSRARSTGACNCGRKQAPRDDPFDIKAAN
YDFYQLLEEKCCGKLDHINFPVFEPSTPDPAPAKNEPSPAPPDSDAEKLKEKEPQTQGESTSLSLALSLG
QSTDSLGTYPADPQAGGDNPEVHGQGEGKSEKRPNLVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVK
LGPAKSYNFHTGLDQQGFVPGTNYLMPWDIVIRTRAEDEGDLDTNSWPAPNKAIPGKRSAVVMGRGRRRD
DIARAFVGFEYEDSRGRRFMCSGPDKVMKVMGSGPKESALKALNSDMPLYILSSSQGRGLKPHYAQLMRL
FVVVPDAPLQIILMPQVQPGPPPCPVFYPEKQEITLPPDGLWVLRFPYAYVTERGPCFPPKENVQLMSYK
VLRGVLKAVTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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