NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18844.1 Public Mus musculus 4 Akr7a5 23 108 98 CCDS HistoryNCBI Gene:110198Re-query CCDS DB by CCDS ID:18844.1Re-query CCDS DB by GeneID:110198See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18844.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073787.6 ENSMUSP00000073459.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073787.6Link to Ensembl Protein Viewer:ENSMUSP00000073459.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000073787Re-query CCDS DB by Protein ID:ENSMUSP00000073459
Original member Current member NCBI NM_025337.3 NP_079613.3 Accepted alive Link to Nucleotide Sequence:NM_025337.3Link to Protein Sequence:NP_079613.3Re-query CCDS DB by Nucleotide ID:NM_025337Re-query CCDS DB by Protein ID:NP_079613Link to BLAST:NP_079613.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079613.3 367 Q8CG76 367 100% 0 0

Chromosomal Locations for CCDS 18844.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 139310755 139311076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139314104 139314291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139314467 139314571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139316710 139316806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139316934 139317033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139317570 139317699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139318092 139318253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGCTGCGTGCAGCGTCCAGAGCCGTGGGCCGCGCTGCTGTTCGCTCCGCGCAGCGCTCCGGGACTTCGG
TC
GGGCGTCCTCTCGCCATGTCCCGGCCTCCGCCACCCCGCGCCGCCTCTGGCGCCCCTCTCCGGCCCGC
T
ACGGTGCTGGGCACCATGGAGATGGGGCGTCGCATGGATGCGAGTGCTAGCGCCGCTTCGGTCCGCGCC
TTC
CTGGAGCGCGGCCACAGCGAGCTGGACACGGCCTTCATGTACTGCGACGGCCAGTCCGAGAACATCC
TG
GGCGGCCTGGGGCTCGGGCTGGGCAGCGGCGACTGCACAGTGAAAATCGCCACCAAGGCCAACCCCTG
G
GAAGGGAAGTCACTGAAGCCTGACAGCATCCGGTCCCAGTTAGAGACGTCTCTGAAGCGGCTGCAGTGT
CCC
CGGGTGGATCTCTTCTACTTACACGCTCCCGACCACAGCACTCCTGTGGAGGAGACACTTCGTGCCT
GC
CACCAGCTGCATCAGGAGGGCAAGTTTGTGGAGCTTGGTCTGTCTAACTATGCCTCCTGGGAAGTGGC
T
GAGATCTGTACCCTCTGCAAGAGCAACGGCTGGATCCTGCCAACTGTGTACCAGGGCATGTACAACGCC
ACC
ACCCGGCAGGTGGAGGCCGAGCTCCTCCCCTGCCTCAGACACTTCGGACTGAGGTTCTACGCCTACA
AC
CCTTTGGCTGGGGGCCTGCTGACTGGCAAGTATAAATACGAAGACAAGGATGGGAAACAACCCGTGGG
C
CGCTTCTTTGGGAATAACTGGGCTGAGACCTACAGGAACCGCTTCTGGAAGGAACACCACTTTGAGGCC
ATC
GCCCTGGTAGAAAAGGCCCTGCAGACCACCTATGGCACCAACGCCCCCCGCATGACCTCGGCCGCCC
TG
CGCTGGATGTACCACCACTCGCAGCTCCAGGGCACCCGAGGGGACGCAGTCATCTTGGGCATGTCCAG
T
CTGGAGCAGCTGGAGCAGAACTTGGCCGCCACTGAGGAAGGGCCCCTGGAGCCGGCTGTCGTGGAAGCC
TTT
GACCAAGCCTGGAACATGGTCGCCCACGAGTGTCCCAACTACTTCAGATAG


Translation (367 aa):
MLRAASRAVGRAAVRSAQRSGTSVGRPLAMSRPPPPRAASGAPLRPATVLGTMEMGRRMDASASAASVRA
F
LERGHSELDTAFMYCDGQSENILGGLGLGLGSGDCT
VKIATKANPWEGKSLKPDSIRSQLETSLKRLQC
P
RVDLFYLHAPDHSTPVEETLRACHQLHQE
GKFVELGLSNYASWEVAEICTLCKSNGWILPTVYQGMYNA
T
TRQVEAELLPCLRHFGLRFYAYNPLA
GGLLTGKYKYEDKDGKQPVGRFFGNNWAETYRNRFWKEHHFEA
I
ALVEKALQTTYGTNAPRMTSAALRWMYHHSQLQ
GTRGDAVILGMSSLEQLEQNLAATEEGPLEPAVVEA
F
DQAWNMVAHECPNYFR




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser