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Report for CCDS16020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16020.1 Public Mus musculus 2 Zeb2 23 108 98 CCDS HistoryNCBI Gene:24136Re-query CCDS DB by CCDS ID:16020.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16020.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068415.10 ENSMUSP00000069685.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068415.10Link to Ensembl Protein Viewer:ENSMUSP00000069685.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000068415Re-query CCDS DB by Protein ID:ENSMUSP00000069685
Original member Current member EBI ENSMUST00000177302.7 ENSMUSP00000134747.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177302.7Link to Ensembl Protein Viewer:ENSMUSP00000134747.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177302Re-query CCDS DB by Protein ID:ENSMUSP00000134747
Original member Current member EBI ENSMUST00000176438.8 ENSMUSP00000134849.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176438.8Link to Ensembl Protein Viewer:ENSMUSP00000134849.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176438Re-query CCDS DB by Protein ID:ENSMUSP00000134849
Original member NCBI NM_001289521.1 NP_001276450.1 Updated not alive Link to Nucleotide Sequence:NM_001289521.1Link to Protein Sequence:NP_001276450.1Re-query CCDS DB by Nucleotide ID:NM_001289521Re-query CCDS DB by Protein ID:NP_001276450
Current member NCBI NM_001289521.2 NP_001276450.1 Accepted alive Link to Nucleotide Sequence:NM_001289521.2Link to Protein Sequence:NP_001276450.1Re-query CCDS DB by Nucleotide ID:NM_001289521Re-query CCDS DB by Protein ID:NP_001276450Link to BLAST:NP_001276450.1
Original member NCBI NM_001355288.1 NP_001342217.1 Updated not alive Link to Nucleotide Sequence:NM_001355288.1Link to Protein Sequence:NP_001342217.1Re-query CCDS DB by Nucleotide ID:NM_001355288Re-query CCDS DB by Protein ID:NP_001342217
Current member NCBI NM_001355288.2 NP_001342217.1 Accepted alive Link to Nucleotide Sequence:NM_001355288.2Link to Protein Sequence:NP_001342217.1Re-query CCDS DB by Nucleotide ID:NM_001355288Re-query CCDS DB by Protein ID:NP_001342217Link to BLAST:NP_001342217.1
Original member NCBI NM_001355289.1 NP_001342218.1 Updated not alive Link to Nucleotide Sequence:NM_001355289.1Link to Protein Sequence:NP_001342218.1Re-query CCDS DB by Nucleotide ID:NM_001355289Re-query CCDS DB by Protein ID:NP_001342218
Current member NCBI NM_001355289.2 NP_001342218.1 Accepted alive Link to Nucleotide Sequence:NM_001355289.2Link to Protein Sequence:NP_001342218.1Re-query CCDS DB by Nucleotide ID:NM_001355289Re-query CCDS DB by Protein ID:NP_001342218Link to BLAST:NP_001342218.1
Original member NCBI NM_001355290.1 NP_001342219.1 Updated not alive Link to Nucleotide Sequence:NM_001355290.1Link to Protein Sequence:NP_001342219.1Re-query CCDS DB by Nucleotide ID:NM_001355290Re-query CCDS DB by Protein ID:NP_001342219
Current member NCBI NM_001355290.2 NP_001342219.1 Accepted alive Link to Nucleotide Sequence:NM_001355290.2Link to Protein Sequence:NP_001342219.1Re-query CCDS DB by Nucleotide ID:NM_001355290Re-query CCDS DB by Protein ID:NP_001342219Link to BLAST:NP_001342219.1
Original member NCBI NM_001355291.1 NP_001342220.1 Updated not alive Link to Nucleotide Sequence:NM_001355291.1Link to Protein Sequence:NP_001342220.1Re-query CCDS DB by Nucleotide ID:NM_001355291Re-query CCDS DB by Protein ID:NP_001342220
Current member NCBI NM_001355291.2 NP_001342220.1 Accepted alive Link to Nucleotide Sequence:NM_001355291.2Link to Protein Sequence:NP_001342220.1Re-query CCDS DB by Nucleotide ID:NM_001355291Re-query CCDS DB by Protein ID:NP_001342220Link to BLAST:NP_001342220.1
Original member NCBI NM_015753.4 NP_056568.2 Updated not alive Link to Nucleotide Sequence:NM_015753.4Link to Protein Sequence:NP_056568.2Re-query CCDS DB by Nucleotide ID:NM_015753Re-query CCDS DB by Protein ID:NP_056568
Current member NCBI NM_015753.5 NP_056568.2 Accepted alive Link to Nucleotide Sequence:NM_015753.5Link to Protein Sequence:NP_056568.2Re-query CCDS DB by Nucleotide ID:NM_015753Re-query CCDS DB by Protein ID:NP_056568Link to BLAST:NP_056568.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276450.1 1215 Q9R0G7 1215 100% 0 0
NP_001342217.1 1215 Q9R0G7 1215 100% 0 0
NP_001342218.1 1215 Q9R0G7 1215 100% 0 0
NP_001342219.1 1215 Q9R0G7 1215 100% 0 0
NP_001342220.1 1215 Q9R0G7 1215 100% 0 0
NP_056568.2 1215 Q9R0G7 1215 100% 0 0

Chromosomal Locations for CCDS 16020.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 44988573 44989153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44994479 44994659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44996026 44997995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44998884 44998992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45001600 45001814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45002516 45002704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45017397 45017468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45022847 45023104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45110016 45110088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3648 nt):
ATGAAGCAGCCGATCATGGCGGATGGCCCCCGGTGCAAGAGGCGCAAACAAGCCAATCCCAGGAGGAAAA
ACGTGGTGAACTATGACAACGTAGTGGACGCAGGCTCGGAGACAGATGAAGAGGACAAGCTTCACATTGC
TGAAGATGATAGCCTTGCAAACCCTCTGGACCAGGACACCAGCCCAGCTAGCATGCCCAACCATGAGTCC
TCCCCACACATGAGCCAAGGGCTGCTACCAAGAGAGGAAGAAGAGGAGGAGCTAAGGGAGAGTGTTGTGG
AGCACAGCTGGCACAGTGGCGAGATTCTGCAAGCCTCTGTAGCCGGTCCAGAAGAAATGAAGGAAGATTA
TGATGCAATGGGGCCAGAAGCCACGATCCAGACCACAATTAACAATGGTACAGTTAAGAATGCAAATTGC
ACATCAGACTTTGAGGAATACTTTGCCAAAAGAAAACTGGAGGAAAGAGATGGCCACGCAGTGAGCATCG
AAGAGTACCTTCAGCGAAGCGACACGGCCATTATTTACCCAGAAGCCCCTGAGGAGCTGTCTCGCCTTGG
CACGCCAGAGGCCAACGGGCAAGAAGAAAATGACCTGCCACCTGGAACTCCAGATGCTTTTGCCCAACTG
CTGACCTGCCCCTACTGCGACCGCGGCTACAAGCGCTTGACATCGCTGAAGGAGCACATCAAGTACCGCC
ACGAGAAGAATGAAGAGAACTTTTCCTGCCCTCTTTGTAGCTACACGTTCGCCTACCGCACCCAGCTCGA
GAGGCATATGGTGACGCACAAGCCAGGGACAGATCAGCACCAAATGCTAACCCAAGGAGCAGGTAACCGC
AAGTTCAAGTGCACGGAGTGTGGCAAGGCCTTCAAGTACAAGCACCACCTGAAAGAACACCTGAGAATTC
ACAGTGGTGAAAAACCTTACGAATGCCCAAACTGCAAGAAACGCTTCTCTCATTCTGGGTCCTACAGTTC
ACATATCAGCAGCAAGAAATGTATTGGTTTAATATCAGTAAATGGCCGAATGAGAAACAATATCAAGACG
GGTTCTTCCCCTAATTCTGTTTCTTCTTCTCCTACTAACTCAGCCATTACTCAGTTAAGGAACAAGTTGG
AAAATGGAAAACCACTTAGCATGTCTGAGCAGACAGGCTTACTTAAGATTAAAACAGAACCACTAGACTT
CAATGACTATAAAGTTCTTATGGCAACACATGGGTTTAGTGGCAGCAGTCCCTTTATGAACGGTGGGCTT
GGAGCCACCAGCCCTTTAGGTGTACACCCATCTGCTCAGAGTCCAATGCAGCACTTAGGTGTAGGGATGG
AAGCCCCTTTACTTGGATTTCCCACTATGAATAGTAACTTGAGTGAGGTACAAAAGGTTCTACAGATTGT
GGACAATACGGTTTCTAGGCAAAAGATGGACTGCAAGACGGAAGACATTTCAAAGTTGAAAGGTTATCAC
ATGAAGGATCCATGTTCTCAGCCAGAAGAACAAGGGGTAACTTCTCCCAATATTCCCCCTGTCGGTCTTC
CAGTAGTGAGTCATAACGGTGCCACTAAAAGTATTATTGACTATACCTTAGAGAAAGTCAATGAAGCCAA
AGCTTGCCTCCAGAGCTTGACCACCGACTCAAGGAGACAGATCAGTAACATAAAGAAAGAGAAGTTGCGT
ACTTTGATAGATTTGGTCACTGATGATAAAATGATTGAGAACCACAGCATATCCACTCCATTTTCATGCC
AGTTCTGTAAAGAAAGCTTCCCGGGCCCTATTCCCCTGCATCAGCATGAACGATACCTGTGTAAGATGAA
TGAAGAGATCAAGGCAGTCCTGCAACCTCATGAAAACATAGTCCCCAACAAAGCTGGAGTTTTTGTTGAT
AATAAAGCCCTCCTCTTGTCATCTGTACTTTCCGAGAAAGGACTGACAAGCCCCATCAACCCATACAAGG
ACCACATGTCTGTACTGAAAGCATACTATGCTATGAACATGGAGCCCAACTCTGATGAACTGCTGAAAAT
CTCCATTGCTGTGGGCCTTCCTCAGGAATTTGTGAAGGAATGGTTTGAGCAAAGAAAAGTCTACCAGTAT
TCGAATTCCAGGTCACCATCACTGGAAAGGACCTCCAAGCCGTTAGCTCCCAACAGTAACCCCACCACAA
AAGACTCTTTGTTACCCAGGTCTCCTGTAAAACCTATGGACTCCATCACATCGCCATCTATAGCAGAACT
CCACAACAGTGTTACGAGTTGTGATCCTCCTCTCAGGCTAACAAAATCTTCCCATTTCACCAATATTAAA
GCAGTTGATAAACTGGACCACTCGAGGAGTAATACTCCTTCTCCTTTAAATCTTTCCTCCACATCTTCTA
AAAACTCCCACAGTAGCTCGTACACTCCAAATAGCTTCTCTTCCGAGGAGCTGCAGGCTGAGCCGTTGGA
CCTGTCATTACCAAAACAAATGAGAGAACCCAAAGGTATTATAGCCACAAAGAACAAAACAAAAGCTACT
AGCATAAACTTAGACCACAACAGTGTTTCTTCATCGTCTGAGAATTCAGATGAGCCTCTGAATTTGACTT
TTATCAAGAAAGAGTTTTCAAATTCTAATAACCTGGACAATAAAAGCAACAACCCTGTGTTCGGCATGAA
CCCATTTAGTGCCAAGCCTTTATACACCCCTCTTCCACCACAGAGCGCATTTCCCCCTGCCACTTTCATG
CCACCAGTCCAGACCAGCATCCCCGGGCTACGACCATACCCAGGACTGGATCAGATGAGCTTCCTACCGC
ATATGGCCTATACCTACCCAACGGGAGCAGCTACCTTTGCTGATATGCAGCAAAGGAGGAAATACCAGAG
GAAACAAGGATTTCAGGGAGACTTGCTGGATGGAGCACAAGACTACATGTCAGGCCTAGATGACATGACA
GACTCCGATTCCTGTCTGTCTCGAAAGAAGATAAAGAAGACAGAAAGTGGCATGTATGCATGTGACTTAT
GTGACAAGACATTCCAGAAAAGCAGTTCCCTTCTGCGACATAAATACGAACACACAGGAAAGAGACCACA
CCAGTGTCAGATTTGTAAGAAAGCGTTCAAACACAAACACCACCTTATCGAGCACTCGAGGCTGCACTCG
GGCGAGAAGCCCTATCAGTGTGACAAATGTGGCAAGCGCTTCTCACACTCGGGCTCCTACTCGCAGCACA
TGAATCACAGGTACTCCTACTGCAAGCGGGAGGCGGAGGAGCGGGAAGCAGCCGAGCGCGAGGCGCGAGA
GAAAGGGCACTTGGAACCCACCGAGCTGCTGATGAACCGGGCTTACCTGCAGAGCATCACCCCTCAGGGG
TACTCTGACTCGGAGGAGAGGGAGAGCATGCCGAGGGATGGCGAGAGCGAGAAGGAGCACGAGAAGGAGG
GCGAGGAGGGTTATGGGAAGCTGCGGAGAAGGGACGGCGACGAGGAGGAAGAGGAGGAAGAGGAAGAAAG
TGAAAATAAAAGTATGGATACGGATCCCGAAACGATACGGGATGAGGAAGAGACTGGGGATCACTCGATG
GACGACAGTTCAGAGGATGGGAAAATGGAAACCAAATCAGACCACGAGGAAGACAATATGGAAGATGGCA
TGGAATAA

Translation (1215 aa):
MKQPIMADGPRCKRRKQANPRRKNVVNYDNVVDAGSETDEEDKLHIAEDDSLANPLDQDTSPASMPNHES
SPHMSQGLLPREEEEEELRESVVEHSWHSGEILQASVAGPEEMKEDYDAMGPEATIQTTINNGTVKNANC
TSDFEEYFAKRKLEERDGHAVSIEEYLQRSDTAIIYPEAPEELSRLGTPEANGQEENDLPPGTPDAFAQL
LTCPYCDRGYKRLTSLKEHIKYRHEKNEENFSCPLCSYTFAYRTQLERHMVTHKPGTDQHQMLTQGAGNR
KFKCTECGKAFKYKHHLKEHLRIHSGEKPYECPNCKKRFSHSGSYSSHISSKKCIGLISVNGRMRNNIKT
GSSPNSVSSSPTNSAITQLRNKLENGKPLSMSEQTGLLKIKTEPLDFNDYKVLMATHGFSGSSPFMNGGL
GATSPLGVHPSAQSPMQHLGVGMEAPLLGFPTMNSNLSEVQKVLQIVDNTVSRQKMDCKTEDISKLKGYH
MKDPCSQPEEQGVTSPNIPPVGLPVVSHNGATKSIIDYTLEKVNEAKACLQSLTTDSRRQISNIKKEKLR
TLIDLVTDDKMIENHSISTPFSCQFCKESFPGPIPLHQHERYLCKMNEEIKAVLQPHENIVPNKAGVFVD
NKALLLSSVLSEKGLTSPINPYKDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQY
SNSRSPSLERTSKPLAPNSNPTTKDSLLPRSPVKPMDSITSPSIAELHNSVTSCDPPLRLTKSSHFTNIK
AVDKLDHSRSNTPSPLNLSSTSSKNSHSSSYTPNSFSSEELQAEPLDLSLPKQMREPKGIIATKNKTKAT
SINLDHNSVSSSSENSDEPLNLTFIKKEFSNSNNLDNKSNNPVFGMNPFSAKPLYTPLPPQSAFPPATFM
PPVQTSIPGLRPYPGLDQMSFLPHMAYTYPTGAATFADMQQRRKYQRKQGFQGDLLDGAQDYMSGLDDMT
DSDSCLSRKKIKKTESGMYACDLCDKTFQKSSSLLRHKYEHTGKRPHQCQICKKAFKHKHHLIEHSRLHS
GEKPYQCDKCGKRFSHSGSYSQHMNHRYSYCKREAEEREAAEREAREKGHLEPTELLMNRAYLQSITPQG
YSDSEERESMPRDGESEKEHEKEGEEGYGKLRRRDGDEEEEEEEEESENKSMDTDPETIRDEEETGDHSM
DDSSEDGKMETKSDHEEDNMEDGME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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