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Report for CCDS38254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38254.1 Public Mus musculus 2 Dzank1 23 108 98 CCDS HistoryNCBI Gene:241688Re-query CCDS DB by CCDS ID:38254.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38254.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081982.11 ENSMUSP00000080643.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081982.11Link to Ensembl Protein Viewer:ENSMUSP00000080643.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000081982Re-query CCDS DB by Protein ID:ENSMUSP00000080643
Original member Current member NCBI NM_172859.3 NP_766447.2 Accepted alive Link to Nucleotide Sequence:NM_172859.3Link to Protein Sequence:NP_766447.2Re-query CCDS DB by Nucleotide ID:NM_172859Re-query CCDS DB by Protein ID:NP_766447Link to BLAST:NP_766447.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766447.2 778 Q8C008 778 100% 0 0

Chromosomal Locations for CCDS 38254.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 144474924 144475089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144476073 144476147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144479015 144479142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144479605 144479685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144481635 144481735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144482131 144482227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144483357 144483431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144484612 144484715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144488621 144488828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144490113 144490277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144491772 144491897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144501427 144501519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144502918 144503031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144504340 144504457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144506159 144506244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144510168 144510292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144511491 144511587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144513396 144513510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144522413 144522566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144525580 144525688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2337 nt):
ATGACTGCTGGCTCAGTGTGTGCCCCTCAGATCATACCACTGCGAGTGCCTCAACCTGGAAAAGCTAACC
ATGAAATTGATACCAATACTCTTTTGGAAATGAAATCCGACACCCCAGATGTCAACATATATTACACCCT
GGATGGCAGCAAACCTGACTTCCTAAAGAAAGTTGGTTCTGGTGAAAATAATACATTTAAATATGTAAAA
CCTATTACTCTGCCTGATGGAAAAATTCAAGTTAAAGCTGTTGCTGTCTCTAAAGACTGCAGACAGAGTG
GAATTGTGACAAAGGTGTTTCAGGTGGACTATGAACCACCGAAGATGGTCTCTTCTGAAGACAATGTTGA
AGATGCTCTCAAGGGGTTCTCAAAGCAGGAATTAAAAAATGGGTTTGTCGGACCAAAACTAAGGAAGAAG
TATAAGAATGCTGAAAATAAATCAACTTGGAACGTTAACCTTAGACGGCTTGCAGACCTCAAGGTAGGCG
AAAGAGCAGACCCTAAAACTCTGAAAGATCTTCGCTTCGCAGAGAGTCCACTGGAAATCCCAGCCTACCA
TGAGGGAGCGAGTGCTCGACTGCCTACTCACCAGGCCCAGTCCCCTGGCTTTGCACACATAACTGGCCAG
AAGAGTCTGACGAGCACCGAGATCATGAGGATCCAGAGGGAGACAGACTTCCTCAAGTGTGCCCACTGTC
TGGCTTCCCGTCCATCTGATCCATTTGCTCGCTTCTGTCACGAATGTGGAGCTCCTGTCCCACCCATATT
TGGCTATCGTCTTCCACCCCCAGAAGGGGCTCAGATGGGCCTGTGTGCAGAATGTGGCAGTATGGTTCCC
ATGAACACCCCCATCTGTGTGGTGTGCGAAGCTCCTCTTGCTCCACAGCTTCGGCCACAGGCCAGCCTCT
ACTTAAAGGAGAGGGTAATCTGTCGCACCTGTGGCACTGGGAATCCTGCTCATCTGAGATACTGTGTCAC
CTGTGAGGGACCCCTGCCTCCAACACAAGAGCAGTGGCTGTGCAATGGAGATGAAGTCCCTCATCCGCCC
GCTCGAAATGGGGAGACCATTTCCTGCTCCAGGTGTGGCTGCCAGAACCTCTGGGAGGCATCCTTCTGTG
ACTGGTGTGGAGCCATGCTTGGCATTTCTGCTAGCCACTCTGTCTGCCCAAAATGTGGGGCCAGCAATCA
TCTGACTGCCCGCTTCTGTGGCTCCTGTGGTATTTATGTGAAGTCCATAACAAGGTTTAGAATGCATAAC
AGCTTGGCCATAGTTGCTGGAGCGCCTCGCCCATTTCCTGAGCCCCGATCTGCCTGGCAGTCCCTAAACG
TCCCTTTGCCCACATCTGCCAGTGGGTCTAAGAAGGACACGGGCACTCAGACCTCTGGCCTGTTCTACCC
ATCTGGCAAGCTCCTGGCAAAGAAGGAACTGGAGGCGGCTTCTCACAGGCAGAGGCAGGAGAAGATGAGT
GACCACAGGCCAGTCCTCACAGCCGTCAGCCCGGGAAGAGGCTACTGGAGAAAGCAGTTGGATCACATCT
CTGCTCACCTCAGGTCCTATGCTCAGAACAACCCTGAATTCCGGGCCTTGATTGCAGAGCCCAGGATGGG
GAAGCTTATCTCTGCCACTGTCCATGAAGATGGCTATGAAGTTAGCATCAGACTGAACTATATTCAAGTC
TCAAACAAGAGCCTGTACTTCAACAAGTCGGTGAATCTCAGTGACCACTTTCTGAGCAGTGTCACCGAAG
GTGGGAACGGGCTATATGACAGCAGGTCCAGCTTGGTGAGTGCCTATAGCCAGAGCGTCTCAGACACCCC
CGAAAGTATCAAGAAGATGAAGAATCTCAAGGCCAAAAGCTTCCTTGTGAACCCAGAGCCGCTCACACCT
GAAAACAAACTCCTGCTGGAGGAAGTTGGCTCCTCAGGGAAAGGAAGACTGTCTGTGCTGGAACAGCTGC
TGGATGAAGGAGCAGACCCTAACTGCTGTGATAGTCAAGGTCGACCTGCTGTTATTGTGGCTGTTGTGAA
TAAACACTATGAAGCCATTCCAGTCCTCGCTCAGAGAGGAGCAGACATCGACCAGCAGTGGGGACCGTTC
AGAAACACAGCTCTTCACGAAGCAACTCTACTTGGCCTGGAAGGAAGGGAGAGCATCGCCACTTTACTGG
GATGCAATGCAAACGCCCAAAAGAAGAACACAAGAGGCCAGACAGCATATGACATCGCTCTGGAGATGGG
AGATGACCTCACCTCTTCTCTCTTTGCCGCTAAGTTCACCCAAGGTCTGGAGGACCAACTTTCTCCACCT
GGGAACCGCATCCTAGGTGACAGTTAG

Translation (778 aa):
MTAGSVCAPQIIPLRVPQPGKANHEIDTNTLLEMKSDTPDVNIYYTLDGSKPDFLKKVGSGENNTFKYVK
PITLPDGKIQVKAVAVSKDCRQSGIVTKVFQVDYEPPKMVSSEDNVEDALKGFSKQELKNGFVGPKLRKK
YKNAENKSTWNVNLRRLADLKVGERADPKTLKDLRFAESPLEIPAYHEGASARLPTHQAQSPGFAHITGQ
KSLTSTEIMRIQRETDFLKCAHCLASRPSDPFARFCHECGAPVPPIFGYRLPPPEGAQMGLCAECGSMVP
MNTPICVVCEAPLAPQLRPQASLYLKERVICRTCGTGNPAHLRYCVTCEGPLPPTQEQWLCNGDEVPHPP
ARNGETISCSRCGCQNLWEASFCDWCGAMLGISASHSVCPKCGASNHLTARFCGSCGIYVKSITRFRMHN
SLAIVAGAPRPFPEPRSAWQSLNVPLPTSASGSKKDTGTQTSGLFYPSGKLLAKKELEAASHRQRQEKMS
DHRPVLTAVSPGRGYWRKQLDHISAHLRSYAQNNPEFRALIAEPRMGKLISATVHEDGYEVSIRLNYIQV
SNKSLYFNKSVNLSDHFLSSVTEGGNGLYDSRSSLVSAYSQSVSDTPESIKKMKNLKAKSFLVNPEPLTP
ENKLLLEEVGSSGKGRLSVLEQLLDEGADPNCCDSQGRPAVIVAVVNKHYEAIPVLAQRGADIDQQWGPF
RNTALHEATLLGLEGRESIATLLGCNANAQKKNTRGQTAYDIALEMGDDLTSSLFAAKFTQGLEDQLSPP
GNRILGDS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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