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Report for CCDS51404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51404.1 Public Mus musculus 4 Pusl1 23 108 98 CCDS HistoryNCBI Gene:433813Re-query CCDS DB by CCDS ID:51404.1Re-query CCDS DB by GeneID:433813See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51404.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097737.4 ENSMUSP00000095344.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097737.4Link to Ensembl Protein Viewer:ENSMUSP00000095344.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000097737Re-query CCDS DB by Protein ID:ENSMUSP00000095344
Original member Current member NCBI NM_001033490.1 NP_001028662.1 Accepted alive Link to Nucleotide Sequence:NM_001033490.1Link to Protein Sequence:NP_001028662.1Re-query CCDS DB by Nucleotide ID:NM_001033490Re-query CCDS DB by Protein ID:NP_001028662Link to BLAST:NP_001028662.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028662.1 291 A2ADA5-1 291 100% 0 0

Chromosomal Locations for CCDS 51404.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155889155 155889168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155889434 155889596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155889669 155889723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155890499 155890669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155890753 155890902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155891052 155891239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155891358 155891415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155891631 155891707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGGCTCCTGCGGGGCGGTGGGCTCGGTGCGTGCGCGCTACCTTGTGTTCTTGCAGTACTTGGGCACTG
ACTTCAATGGGGTTGCGGCCGTGAGGGGCAATCCGCGCGCTGTTGGGGTGCTGAACTTCCTGGAGGAGGC
TGCCAAGCGGCTGAACTCTGTCGACCCGGTCAGGTTCACCATCTCTAGCCGCACCGATGCCGGGGTGCAT
GCCCTGAGCAACGCGGCGCACCTGGACATCCAGCGCCGCCCAGGGCAGTCGCCTTTCTCCCCGGAGGTCG
TGGCCAAGGCCCTCAACACCCACCTGAAGCACCCGGCCATTCGTGTACTGAAGGCCTTCCGAGTGCCCAA
CGACTTCCACGCTCGACACGCAGCCACCTCCAGGACCTACCAATATCGTCTGGCCACAGGCTGCTCCTGG
CCTAATCAACTGCCTGTGTTTGAACAAAATGTATGCTGGGCTCTGCAGACAGAGTACCTGGATATGGCGG
CCATGCAGGAGGCTGCCCAGCACCTCCTCGGGACACATGATTTTAGTGCCTTCCAGTCTGCTGGCAGCCC
AGTCACAAATACTGTACGCACACTTCGAAGAGTCTCAGTGTCACCTGGTCCAGCCAGCCCATTTGTCCTC
CCCGAGGGGAGCAGGAGGCTGCAGTTCTGGACCTTGGAGTTTGAGAGCCAGTCTTTCCTTTATAGACAGG
TGCGGAGGATGACAGCTGTGTTGGTGGCTGTGGGGCTAGGGATCCTGGCACCCACACAAGTGAAAGTGAT
TCTGGAGAGTCAAGATCCCTTGGGCAAGTATCAGGCTCGAGTTGCTCCAGCCCGTGGCCTGTTCTTGAAG
TCAGTGCTGTATGACAACTTTGGTCCTACATCCTGA

Translation (291 aa):
MGSCGAVGSVRARYLVFLQYLGTDFNGVAAVRGNPRAVGVLNFLEEAAKRLNSVDPVRFTISSRTDAGVH
ALSNAAHLDIQRRPGQSPFSPEVVAKALNTHLKHPAIRVLKAFRVPNDFHARHAATSRTYQYRLATGCSW
PNQLPVFEQNVCWALQTEYLDMAAMQEAAQHLLGTHDFSAFQSAGSPVTNTVRTLRRVSVSPGPASPFVL
PEGSRRLQFWTLEFESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPARGLFLK
SVLYDNFGPTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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