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Report for CCDS52275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52275.1 Public Mus musculus 7 Fam174b 23 108 98 CCDS HistoryNCBI Gene:100038347Re-query CCDS DB by CCDS ID:52275.1Re-query CCDS DB by GeneID:100038347See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107456.3 ENSMUSP00000103080.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107456.3Link to Ensembl Protein Viewer:ENSMUSP00000103080.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107456Re-query CCDS DB by Protein ID:ENSMUSP00000103080
Original member Current member NCBI NM_001162532.1 NP_001156004.1 Accepted alive Link to Nucleotide Sequence:NM_001162532.1Link to Protein Sequence:NP_001156004.1Re-query CCDS DB by Nucleotide ID:NM_001162532Re-query CCDS DB by Protein ID:NP_001156004Link to BLAST:NP_001156004.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156004.1 153 Q8K064 153 100% 0 0

Chromosomal Locations for CCDS 52275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 73740503 73740828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73766487 73766618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73774896 73774899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGAGCGCCCTGCCACCCCAACCGCCGCCACCGCTGCTGCTGCTGCTGCTCGCGCTCCTGGCCGCGCCCG
CCGCCCTCGCTCGCAGAGCCGAGTCCGCTTCGGCCTCCCAGCCCGAAGCAGAACACCAGCCTCCGCCCGG
TCCCGGGAATGCTACCCAGCTGGGATCCGGCATGGCGGGCGGGGGAAGCTCCAACAGCAGCGTCGACGCG
GTGGTGACCCGCATCTCCAGTCTGCTTCGTGACCTGCCTACCCTGAAGGCGACGGTGATCGTGGCATGTG
CCTTCAGCGCGCTGCTCATCGCCTGTCTGCTGCTGCGCGTCTTCAGGTTGGGAAAAAGGTTGAAGAAGAC
TCGCAAGTATGACATCATCACCACCCCTGCGGAACGTGTGGAAATGGCCCCACTGAATGAGGAGGACGAT
GAGGATGAAGACTCTACAGTATTTGACATCAAATATAGGTAA

Translation (153 aa):
MSALPPQPPPPLLLLLLALLAAPAALARRAESASASQPEAEHQPPPGPGNATQLGSGMAGGGSSNSSVDA
VVTRISSLLRDLPTLKATVIVACAFSALLIACLLLRVFRLGKRLKKTRKYDIITTPAERVEMAPLNEEDD
EDEDSTVFDIKYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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