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Report for CCDS21003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21003.1 Public Mus musculus 7 Nlrp4a 23 108 98 CCDS HistoryNCBI Gene:243880Re-query CCDS DB by CCDS ID:21003.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21003.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068767.9 ENSMUSP00000066841.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068767.9Link to Ensembl Protein Viewer:ENSMUSP00000066841.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000068767Re-query CCDS DB by Protein ID:ENSMUSP00000066841
Original member Current member EBI ENSMUST00000119386.7 ENSMUSP00000112441.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119386.7Link to Ensembl Protein Viewer:ENSMUSP00000112441.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119386Re-query CCDS DB by Protein ID:ENSMUSP00000112441
Original member NCBI NM_001362156.1 NP_001349085.1 Updated not alive Link to Nucleotide Sequence:NM_001362156.1Link to Protein Sequence:NP_001349085.1Re-query CCDS DB by Nucleotide ID:NM_001362156Re-query CCDS DB by Protein ID:NP_001349085
Current member NCBI NM_001362156.2 NP_001349085.1 Accepted alive Link to Nucleotide Sequence:NM_001362156.2Link to Protein Sequence:NP_001349085.1Re-query CCDS DB by Nucleotide ID:NM_001362156Re-query CCDS DB by Protein ID:NP_001349085Link to BLAST:NP_001349085.1
Original member NCBI NM_172896.3 NP_766484.1 Updated not alive Link to Nucleotide Sequence:NM_172896.3Link to Protein Sequence:NP_766484.1Re-query CCDS DB by Nucleotide ID:NM_172896Re-query CCDS DB by Protein ID:NP_766484
Current member NCBI NM_172896.4 NP_766484.1 Accepted alive Link to Nucleotide Sequence:NM_172896.4Link to Protein Sequence:NP_766484.1Re-query CCDS DB by Nucleotide ID:NM_172896Re-query CCDS DB by Protein ID:NP_766484Link to BLAST:NP_766484.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349085.1 982 Q8BU40 982 100% 0 0
NP_766484.1 982 Q8BU40 982 100% 0 0

Chromosomal Locations for CCDS 21003.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 26444212 26444488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26449247 26450819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26453357 26453515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26454035 26454199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26457026 26457193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26459639 26459809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26462442 26462612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26464094 26464264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26475046 26475139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2949 nt):
ATGGCATCTTTCTTTTCTGATTTTGGCCTTATGTGGTACTTGGAAGAGCTAAACAAGAAGGAATTCGTAA
AGTTTAAGGAGTTCCTCAAACAGGAGGTTTTGCAGTTGGGCCTGAAACAGGTTTCTTGGACAGAAGTGAA
GAAGGCATCTCGGCAAGACCTTGCCAGCTTACTGTTGAAACATTATGAAGAGAAGCCAGCCTGGGATATG
ACCTTCAGATTTTTCCAGAAGATCAACAGGAAGGATCTCATAGAGAGAGCAAAAAGAGAGATTGATGGAT
GCCCAAAGTTATATCGAGCTCATATGAAGACCAAGATGACCCATGACAGTTCCAGAGCATTCACTATTAG
TATTCAGAATTTTTTAAAGGAGAAATTTACTGAGGATGACTATGATTGTTTTGAGAACCTTTTCCAATCA
AAGGGCACTGAATCAAAGCCACAGGTGGTGTTCCTGAGTGGTGGTGCTGGAGTTGGCAAGACACTGATGT
TGAAGAGGTTAATGCTGGCCTGGATAGAAAGCCCAGTGTTTCTGCACAAATTCTCCTACATCTTCTACTT
CTGCTGTCGAGAAGTGAAGCAGTTGAAGACAGCTAGCCTGGCTGAATTGATCTCCAGAGAATGGCCTGGC
CCCTCAGCTCCCATAGAGGAGATACTATCCAAACCTGAGAAACTCTTATTTATCATCGACAGCTTAGAAG
GGATGGAATGTGATTTGTTCAAATGGGAATCAGAGCTGTGTGATAACTGTACAGAGAAGCAGCCAGTGAA
TGTACTGCTGAGCAGTTTGCTCAGGAGGAAGATGCTCCCTGAATCCTCTCTCCTCATCTCTGCTACCCCA
GAGAGTTTTGAAAAAATGGAGAACAGGATTGAATACACACATGTGAAAATAATAAAGGGACTTAAGGAGA
GAAATATTAAGATGAGTTTCCACAGATTATTCCAAGATAGGAACAGAGCCCATGAAGCCTTCAGTCTGGT
GAGAGAAAATGAGCAGCTGTTCACTGTATGTCAGGTCCCTGTGCTCTGCTGGATGGTGGCTACTTGTCTA
AAAGAAGAGATAGAGAAGGGAAGAGACCCAGTCTCCATTTGCCGTTGTACTACCTCCCTGTATACCACTC
ACATCTTCAATTTGTTCATTCCCCAAAATGCCCATTCTCCAAGTAAGAAAAGCCAAGACCAGCTGCAGGG
CTTATGTTCTCTGGCCGCTGAGGGCATGTGGACTGACACGTTTGTGTTTGGTGAGGAGGCTCTCAGGAGA
AATGGGATCATGGACTCTGACATCCCCATACTACTGGACATTGGAATGCTTATAAATATCAGGGAATCTG
AAAAATCTTATATATTTCTCCATCCATCTGTTCAGGAGGTCTGTGCAGCTATCTTTTATCTGCTAAAGAG
CCACGTGGACCACCCTAGCCAGGAGGTTAAAAGTATAGAGAAACTCATGTTTGCATTTCTAAAGAAAGTC
AAAGTACAGTGGATTTTCTTTGGCTCTTTCATCTTTGGCCTTTTACATGAATCAGAACAAAAAAAGCTAG
AGGCGTTTTTTGGCCACCAGTTGTCCCAAGAAATAAAACGTCAGTTGTATCAGTGCCTGGAAACTATAAG
TGGCAACGAAGAGCTTCAAGAACAGATAGATGGCATGAAGCTGTTTTACTGTCTGTTTGAGATGGACGAT
GACACCTTCTTAGTAGAAGCTATGAACTGTATGGAACAGATTAACTTTGTGGCTAAGGATTATTCTGATG
TTATTGTTGCTGCCCACTGCTTAAAACACTGTTTTACACTGAAGAAACTATCCTTTTCAACCCAGAATGT
CCTGAGTGGAGCTCAAGAACACAGCTATATGGAAAGGCTGCTCACTGCTTGGAATCATATTTGCTCTGTG
TTCATAATCAGTAAGGACATTCAGGAACTCCGAATGAAAGACACTAATCTCAGTGAATCAGCCTTTTCAG
TCTTGTATAATAATTTGAAGTACCACAACTACACCCTTAACGTTCTTGTGGCAAATAATGTGTTCTTCGT
ATGTGAAAAGTACCTGTTCTTTGAGTTGATTCAGAACTGCAATTTACAGCACTTGAACCTCAGCCTCACA
ATTCTCTCCCACAGTGATGTGAAACTGTTGTGTGATGTCTTGAGCCAGGCAGAGTGCAACATAGAAGAAC
TTGTGGTAGCAGCTTGTAGTATTTCATCTGATGACTGCAAGGTGTTTGCCTCTGTCCTGATCAGCAACAA
GACCTTGAAGCATCTTAATTTGGCATCCAACACCTTGGACAAAGGAATAGCCTCACTGTGCAAGTCTTTG
TGCCACCCAGACTGCATTCTCGAGCACTTAGTTTTGGCCAACTGCTCCCTCAATGAGAAATGCTGGGATT
ACCTTTCAGAAGTTCTTAGGCGGAACAAAACCTTGAGCCACCTAGACATCAGCTCCAATGACCTGAAGGA
TGAAGGGCTGAAGGTTCTCTGTAGGGCTCTGACTCTCCCAGACAGTGTCCTGAAGTCACTAAGTTTGAGA
CATTGTCTCATCACCATTAGTGGTTGCCAGGACCTGGCTGAAGTCTTGAGGAACAACCAGAACCTGGTCA
GCCTACAAGTTTCGAACAATAAACTAGAAGACACTGGTGTGAAGCTGCTGTGTGATGCTATAAAACATCC
CAACTGCCACTTAGAGGATCTTGGGTTGGAAGCCTGTGAGCTAACTGGTGCCTGTTGTGAGGACCTTGCA
TCTACATTTACTCAGTGTAAGACTCTGTGGGCAATGAACCTACTGAAGAATGCCTTGGACTACAATGGGT
TGGTTGTCCTGTGTGAAGCTTTGAAACAGCAAACATGTGCCACATACGTACTTGGATTGCAAATTACTGA
CTTTGATACTGAAACCCAGGCATTTCTGGTTGCTGAACAAGAGAAAAATCCATGCTTGCGCATCCTAAGC
AGTCTGTAA

Translation (982 aa):
MASFFSDFGLMWYLEELNKKEFVKFKEFLKQEVLQLGLKQVSWTEVKKASRQDLASLLLKHYEEKPAWDM
TFRFFQKINRKDLIERAKREIDGCPKLYRAHMKTKMTHDSSRAFTISIQNFLKEKFTEDDYDCFENLFQS
KGTESKPQVVFLSGGAGVGKTLMLKRLMLAWIESPVFLHKFSYIFYFCCREVKQLKTASLAELISREWPG
PSAPIEEILSKPEKLLFIIDSLEGMECDLFKWESELCDNCTEKQPVNVLLSSLLRRKMLPESSLLISATP
ESFEKMENRIEYTHVKIIKGLKERNIKMSFHRLFQDRNRAHEAFSLVRENEQLFTVCQVPVLCWMVATCL
KEEIEKGRDPVSICRCTTSLYTTHIFNLFIPQNAHSPSKKSQDQLQGLCSLAAEGMWTDTFVFGEEALRR
NGIMDSDIPILLDIGMLINIRESEKSYIFLHPSVQEVCAAIFYLLKSHVDHPSQEVKSIEKLMFAFLKKV
KVQWIFFGSFIFGLLHESEQKKLEAFFGHQLSQEIKRQLYQCLETISGNEELQEQIDGMKLFYCLFEMDD
DTFLVEAMNCMEQINFVAKDYSDVIVAAHCLKHCFTLKKLSFSTQNVLSGAQEHSYMERLLTAWNHICSV
FIISKDIQELRMKDTNLSESAFSVLYNNLKYHNYTLNVLVANNVFFVCEKYLFFELIQNCNLQHLNLSLT
ILSHSDVKLLCDVLSQAECNIEELVVAACSISSDDCKVFASVLISNKTLKHLNLASNTLDKGIASLCKSL
CHPDCILEHLVLANCSLNEKCWDYLSEVLRRNKTLSHLDISSNDLKDEGLKVLCRALTLPDSVLKSLSLR
HCLITISGCQDLAEVLRNNQNLVSLQVSNNKLEDTGVKLLCDAIKHPNCHLEDLGLEACELTGACCEDLA
STFTQCKTLWAMNLLKNALDYNGLVVLCEALKQQTCATYVLGLQITDFDTETQAFLVAEQEKNPCLRILS
SL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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