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Report for CCDS22247.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22247.2 Public Mus musculus 8 Prag1 23 108 98 CCDS HistoryNCBI Gene:244418Re-query CCDS DB by CCDS ID:22247.2See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 22247.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data or publications.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22247.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110492.1 ENSMUSP00000106118.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110492.1Link to Ensembl Protein Viewer:ENSMUSP00000106118.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110492Re-query CCDS DB by Protein ID:ENSMUSP00000106118
Original member NCBI NM_172911.3 NP_766499.2 Updated not alive Link to Nucleotide Sequence:NM_172911.3Link to Protein Sequence:NP_766499.2Re-query CCDS DB by Nucleotide ID:NM_172911Re-query CCDS DB by Protein ID:NP_766499
Current member NCBI NM_172911.4 NP_766499.2 Accepted alive Link to Nucleotide Sequence:NM_172911.4Link to Protein Sequence:NP_766499.2Re-query CCDS DB by Nucleotide ID:NM_172911Re-query CCDS DB by Protein ID:NP_766499Link to BLAST:NP_766499.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766499.2 1373 Q571I4 1373 100% 0 0

Chromosomal Locations for CCDS 22247.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 36099697 36099987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36102556 36104351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36129004 36129161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36139352 36140112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 36146302 36147417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4122 nt):
ATGTCTGCGTGCAGCGACTTTGTGGAGCACATCTGGAAACCCGGGTCTTGCAAGAACTGCTTCTGCTTGC
GAAGTGATCATCAGCCAACAGCTGGCCATCCCAAGGCTAGAGCCAACAGCCTACCCGCTGGAACTCGCCT
GCCTGCCAGGCCTGAGAATTGCCGCCTAGACGACGAAGGCGTGAATGGCTTGGCCTACTCAAAGCCCACC
ATTGCTGTAAAGCCCACCATGATGACTTCTGAGACCTCCGACTTGTGGACTGAAGCCAGCCTGAGCGCTG
AAGTCCCAAAGGTCAATTGGAGACGAACCCCAGGCAAGCTCCTGCTCCCGAAACAGGAAGATGAGCCAAT
AGTTTACCTAGGCAGCTTCCGAGGACTGCAGAAGCCTGCAAGCCCTCTTGCCTGCACAGATGGCAACTCT
CGTTGTCCCCCAGCCTATACCATGGTCGGACTGCATAACCTGGAGGCCCGCGTGGATAGGAACACTGCCT
TTCAACCAGTGAGCTTCCAGGAAGAGAAGGCTGGGAGGGAAGAGCTGCCCTCAGCTCACGAGAGCTTTCG
CCAGAAGCTGGCTGCCTTTGCAGGGATGACATCCAGCTGCCCCAAGGGCCCCAGGCCCTGCACTTCTCCA
CAGCCCCTGCGGGAATCCCTGCCCTCGGAGGATGACAGTGACCAAAGGTGCTCACCCTCAGGAGACAGCG
AAGGTGGGGAGTACTGTTCCATTCTGGACTGTTGTCCAGAATCCAAAGATGCTGTGCATAGCACCGAGGG
CTCTGGCAGACGTGGAGGGGACTGCTCACCCACGTGCAGGGAGCAGGGACCACGTACAAGACCAACAGAA
GAGGAAAAACAGGGTCTGAGCTTCCCCAGAGAGTGCTGTGGTCAGGGATCCACAGCGAACCCGCCCCGCC
TGGGCCCCAAGAAGCCATCCCTTAACTCTGAGGCCGCCAGCTCTTCCGATGGTCTGTCCTGTGGCAGCAG
CCGCAGCGGGGCCAGCAGCCCCTTCGCTCCCCACCTTGAGAACGACTACTGCTCTCTTGTGAAGGAACCG
GCCTCAGGGAAGCAGCAAGACCTCAGCGGCCACTTTCTCACCTCTGGCAAATGTGTGGGTCAAGCTGCGG
AACTCCAGCCCGCCTCCCTTCTTAGGGACCCTGTGCAGCCTGAACCCATCTACGCCGAAAGCGCCAAGAG
GAAGAAGGCAGCTCCGGGGCCTCCGAGGCCCGAGCCCAAGAAAGAGCAGGTCCCAGCTGGCCATAGCCAG
GGCCAAGTATGGACAGGTGATACCTGGATTCAGAAGACACCCCCTAGCTGGAGCCAGGACAGGGAAGGCG
CAAACCCTGCTCCTCAGGTGGCAACCACCATCACTGTCATCGCTGCTCACCCGGAAGAGGACCACAGGAC
TATTTATCTGAGCAGCCCTGACTCTGCCGTGGGGGTGCAGTGGCCACGTGGGCCTTCGAACCAGGACTTA
CAAGCCGGTGAAGAGGAGCCTTTGGTTGCGCAGGGGCTAACCTCAAGGGAGAGCCATCCACATAATGTGA
CTGAAAACACGGCCAAAGAGAAGCCTGCCATTCCCCCCAAACTGTCCAAAAGCAGCCCCGGAGGGTCCCC
TGTGTCTCCCGCGCCCCCACTGACTGACCACAGCGACGGGAACACCGGTGGCAGCAGCGTCGGACCCCAA
CTTTTGTCTAGAGTCCCTGCTAACCTAACGTCTTCCTGCCACACCAATGGCGTTGCCACTGCTGGTGACT
CTGCCAAGTGTCCCCCACCAGCCACCTCCTCTTCAGTCTTGGACCAGAGGCGGCCAAGATACCAGACTGG
TGCTTGGAGCCGCCAGTGCCGGATAGAAGAGGAGGAGGAGGTGGGGCAGGAGTTGAGTCAAAGTTGGGGG
AGAGAGTTGGAAAACGGTACCGCAGACCATTCAAACTCCTCTACCTGGCACCGTCTCCATCCCATCGATG
GCACCTCTGGGCAGAACAGCAAAACTAACTCTGGGATGAGCAAATCGGCTTCCTTTGCGTTTGAGTTCCC
AAAGGACAGAGGCAGATTGGAGGCATTCTCACCCCCTCCCCCACCTCCAAAGTCAAGGCACCTGTTAAAA
ATGAACAAGAGCAGTTCTGACTTGGAAAAAGTGAGCCAGAGTTCTGCAGAAAGCCTCAGCCCGTCCTTCA
GAGGGGCCCACGTCAGCTTCACCACGGGCTCCACAGATAGCCTAGCCTCGGACTCCAGGCCCTGCAGCGA
TGGAGGTCCATCATATGAACCCACCCACTCACCCACCATCAGCGGGAAAAAGCTCTTCGCTCCCGTCCCT
TTTCCATCAGGCTCCACAGAGGATGTGTCCCCTGGTGGTGGTCCTGCGCAGCCTCCTCCTCTGCCCCAGA
AAAAGATAGTGAGCCGTGCCGCCTCTTCCCCTGATGGCTTCTTCTGGACCCAAGGTTCCCCTAAGCCACG
GACGGCAAGTCCCAAGCTGAACCTAAGCCATTCAGAAACCAATGTTTGTGCCCATGACGAGCCTCCTTTT
AACTGTTCCTTGAACTCTGGAAACCGTTCCCACCATGTCTTCTCCTCTTCTGAGCCTTTGGGGAAAGCTT
TCAAAGGCAATGCTCCCTGGGCCCCAGCTCTGGGGCTGGCGAACAGCAAAGGCGGCTGTGGGAGCCCCAG
TCTCCAGTGCAGAGCGGCCACCTCCACGTCATCATCCCAGCTCAGCGTGTCCAGCCAGGCCTCCTCCAGC
AGCACCCAGCTTCAGCTGCACAGCCTGCTGAGTAGCATCAGCAGCAAGGAGGGCACCTATGCCAAGCTTG
GGGGCCTCTACACACAATCCCTGGCCCGCCTAGTGACCAAGTGTGAAGATCTCTTCATGGGTGGCCAGAA
AAAGGAACTGCGCTTCAATGAGAATTACTGGTCACTCTTCAAGCTGACGTGCAACAAACCTTGCTGTGAC
TCGGGGGATGCAATTTACTACTGTGCCACCTGCTCTGAGGACCCAGGCAGCATCTATGCTGTGAAAATCT
GCAAAACCCCAGAACCCAAATCAGCCTCATACTGCAGCCCATCTGTGCCGGTGCATTTCAACATCCAGCA
AGACTGCGGCCACTTTGTGGCCTCTGTGCCCTCCAGCATGCTTGCCTCCCCTGACACATCCAGCAAAGAC
ACCGCGCCTGCCGTATCCCCACAGCCCCCTGCCCAGGAGCAGGACTGTGTGGTGGTCATCACCCGGGAGG
TACCGCACCAGACTGCCTCCGACTTTGTGCGGGACTCTATGGCCAGCCACCGGGCGGAGCCTGAGGTTTA
CGAGCGCCGGGTGTGCTTCCTGCTTCTGCAGCTCTGCAACGGGCTGGAGCACCTGAAGGAACACGGGATC
ATCCACCGGGACCTGTGTCTGGAGAACCTGCTGCTGGCGCACTGTAACCCTCAGAGCTCCCCCGGGCCCT
CTGCCACTCCTACCGTGCCCACCACCACATCCAGGTGCCCTTCTGCCGCGCCCGCAGCCACCACTGCCTG
CCAGGGAGGGCCTGGTGAGAAGCAGCTGCCCAGGCTCATCATCAGCAACTTCCTGAAGGCCAAGCAAAAG
CCAGGAGGCACCACCAACCTGCAACAGAAGAAGAGCCAGGCCCGGCTGGCTCCCGAGATCGTGTCTGCCT
CCCAGTACCGCAAGTTTGATGAGTTCCAGACGGGCATCCTCATCTATGAGCTGCTCCACCAGCCCAACCC
ATTCGAGGTGCGAGCCCAGCTCCGGGAGCGCGACTACCGGCGGGAGGACTTACCCCCGCTGCCCACACTG
TCCCTCTACTCTCCCGGCCTGCAGCAACTCGCCCATCTACTGCTTGAGGCTGATCCCATCAAGCGCATCC
GCATAGGTGAAGCTAAGCGGGTGCTGCAGTGCTTGCTGTGGGGGCCACGGCGGGAGCTGGTGGAGCAGCC
GTGCACGTCAGAGGAGGTACTGTGTAACACTCTGCACAACTGGATCGACATGAAGCGAGCACTGATGATG
ATGAAGTTTGCTGAGAAGGCGGTGGACCGAAGGCGGGGTGTGGAACTGGAGGACTGGCTTTGCTGCCAGT
ACTTGGCCTCGGCAGAGCCAGGGGCCCTCTTGCAGTCCCTGAAGCTCCTACAACTTCTCTGA

Translation (1373 aa):
MSACSDFVEHIWKPGSCKNCFCLRSDHQPTAGHPKARANSLPAGTRLPARPENCRLDDEGVNGLAYSKPT
IAVKPTMMTSETSDLWTEASLSAEVPKVNWRRTPGKLLLPKQEDEPIVYLGSFRGLQKPASPLACTDGNS
RCPPAYTMVGLHNLEARVDRNTAFQPVSFQEEKAGREELPSAHESFRQKLAAFAGMTSSCPKGPRPCTSP
QPLRESLPSEDDSDQRCSPSGDSEGGEYCSILDCCPESKDAVHSTEGSGRRGGDCSPTCREQGPRTRPTE
EEKQGLSFPRECCGQGSTANPPRLGPKKPSLNSEAASSSDGLSCGSSRSGASSPFAPHLENDYCSLVKEP
ASGKQQDLSGHFLTSGKCVGQAAELQPASLLRDPVQPEPIYAESAKRKKAAPGPPRPEPKKEQVPAGHSQ
GQVWTGDTWIQKTPPSWSQDREGANPAPQVATTITVIAAHPEEDHRTIYLSSPDSAVGVQWPRGPSNQDL
QAGEEEPLVAQGLTSRESHPHNVTENTAKEKPAIPPKLSKSSPGGSPVSPAPPLTDHSDGNTGGSSVGPQ
LLSRVPANLTSSCHTNGVATAGDSAKCPPPATSSSVLDQRRPRYQTGAWSRQCRIEEEEEVGQELSQSWG
RELENGTADHSNSSTWHRLHPIDGTSGQNSKTNSGMSKSASFAFEFPKDRGRLEAFSPPPPPPKSRHLLK
MNKSSSDLEKVSQSSAESLSPSFRGAHVSFTTGSTDSLASDSRPCSDGGPSYEPTHSPTISGKKLFAPVP
FPSGSTEDVSPGGGPAQPPPLPQKKIVSRAASSPDGFFWTQGSPKPRTASPKLNLSHSETNVCAHDEPPF
NCSLNSGNRSHHVFSSSEPLGKAFKGNAPWAPALGLANSKGGCGSPSLQCRAATSTSSSQLSVSSQASSS
STQLQLHSLLSSISSKEGTYAKLGGLYTQSLARLVTKCEDLFMGGQKKELRFNENYWSLFKLTCNKPCCD
SGDAIYYCATCSEDPGSIYAVKICKTPEPKSASYCSPSVPVHFNIQQDCGHFVASVPSSMLASPDTSSKD
TAPAVSPQPPAQEQDCVVVITREVPHQTASDFVRDSMASHRAEPEVYERRVCFLLLQLCNGLEHLKEHGI
IHRDLCLENLLLAHCNPQSSPGPSATPTVPTTTSRCPSAAPAATTACQGGPGEKQLPRLIISNFLKAKQK
PGGTTNLQQKKSQARLAPEIVSASQYRKFDEFQTGILIYELLHQPNPFEVRAQLRERDYRREDLPPLPTL
SLYSPGLQQLAHLLLEADPIKRIRIGEAKRVLQCLLWGPRRELVEQPCTSEEVLCNTLHNWIDMKRALMM
MKFAEKAVDRRRGVELEDWLCCQYLASAEPGALLQSLKLLQLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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