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Report for CCDS11478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11478.1 Public Homo sapiens 17 ASB16 24 110 108 CCDS HistoryNCBI Gene:92591Re-query CCDS DB by CCDS ID:11478.1Re-query CCDS DB by GeneID:92591See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11478.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293414.6 ENSP00000293414.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293414.6Link to Ensembl Protein Viewer:ENSP00000293414.1Re-query CCDS DB by Nucleotide ID:ENST00000293414Re-query CCDS DB by Protein ID:ENSP00000293414
Original member Current member NCBI NM_080863.5 NP_543139.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080863.5Link to Protein Sequence:NP_543139.4Re-query CCDS DB by Nucleotide ID:NM_080863Re-query CCDS DB by Protein ID:NP_543139Link to BLAST:NP_543139.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543139.4 453 Q96NS5 453 100% 0 0

Chromosomal Locations for CCDS 11478.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44170790 44171090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44172046 44172313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44176738 44177230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44177609 44177722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44178205 44178390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGCAAGAGAGACCTTCCCCTTCACCTCCTCCATGCTGCGCTCTCTCCGCCTGCAGCAGGAGTGGCTGG
AATGGGAGGACCGGCGGCGGGCGGCTGCCCAGCAGTGCCGGAGCCGCAGGTGCCCGTCAAGTCCCCGGGC
CCGACTCACTAGGCCTCACCGTTCCTGCCGAGACCCAGCTGTCCACCAAGCCCTCTTCTCCGGCAACCTG
CAGCAGGTCCAAGCCCTGTTCCAAGATGAAGAGGCCGCCAACATGATTGTGGAGACTGTGAGCAACCAGC
TGGCCTGGTCGGCTGAACAGGGGTTCTGGGTGCTGACCCCCAAGACCAAGCAGACGGCACCCCTCGCCAT
CGCTACAGCCCGAGGCTACACAGACTGTGCTCGACACCTGATCCGGCAGGGAGCTGAGCTGGATGCCCGT
GTCGGGGGTCGCGCTGCCTTGCATGAGGCCTGTGCCCGAGCCCAGTTTGACTGTGTGCGGCTGCTGCTGA
CCTTCGGAGCCAAGGCTAATGTGCTGACTGAGGAGGGCACGACTCCTTTGCACCTCTGCACGATCCCCGA
GTCCTTGCAGTGCGCCAAGTTGCTGCTGGAAGCAGGAGCGACGGTGAACCTGGCAGCAGGCGAGAGCCAG
GAGACGCCCCTGCACGTGGCGGCGGCGCGCGGCCTGGAGCAACATGTGGCTCTGTACCTGGAGCATGGCG
CCGACGTGGGCCTGCGCACCAGCCAGGGCGAGACTGCGCTGAACACGGCGTGCGCTGGGGCCGAGGGCCC
AGGTAGCTGCAGGCGACACCAGGCTGCGGCGCGCCGGCTCCTGGAGGCTGGAGCTGATGCCCGGGCGGCC
GGGCGCAAGCGCCACACGCCGCTGCACAACGCTTGTGCCAACGGCTGCGGGGGCCTGGCCGAGCTGCTGC
TGCGTTACGGGGCCCGCGCTGAGGTCCCCAATGGGGCGGGCCACACGCCCATGGACTGTGCGCTGCAGGC
CGTCCAGGACTCCCCCAACTGGGAGCCTGAAGTCCTTTTCGCCGCACTGCTGGACTACGGGGCGCAGCCA
GTGCGCCCTGAGATGCTGAAACACTGCGCCAACTTCCCTCGGGCCCTGGAAGTCCTGCTTAATGCCTATC
CTTGTGTCCCATCCTGTGAGACCTGGGTGGAGGCGGTGCTCCCAGAGCTGTGGAAGGAGCACGAAGCCTT
CTACAGCTCGGCCCTGTGCATGGTGAACCAGCCAAGGCAGCTGCAGCACCTGGCCCGACTAGCTGTGCGC
GCTCGGTTGGGAAGCCGCTGCCGGCAGGGTGCCACCCGGCTGCCACTGCCCCCGCTCCTCAGGGACTACC
TGCTGCTGCGTGTGGAGGGGTGCATCCAGTGA

Translation (453 aa):
MARETFPFTSSMLRSLRLQQEWLEWEDRRRAAAQQCRSRRCPSSPRARLTRPHRSCRDPAVHQALFSGNL
QQVQALFQDEEAANMIVETVSNQLAWSAEQGFWVLTPKTKQTAPLAIATARGYTDCARHLIRQGAELDAR
VGGRAALHEACARAQFDCVRLLLTFGAKANVLTEEGTTPLHLCTIPESLQCAKLLLEAGATVNLAAGESQ
ETPLHVAAARGLEQHVALYLEHGADVGLRTSQGETALNTACAGAEGPGSCRRHQAAARRLLEAGADARAA
GRKRHTPLHNACANGCGGLAELLLRYGARAEVPNGAGHTPMDCALQAVQDSPNWEPEVLFAALLDYGAQP
VRPEMLKHCANFPRALEVLLNAYPCVPSCETWVEAVLPELWKEHEAFYSSALCMVNQPRQLQHLARLAVR
ARLGSRCRQGATRLPLPPLLRDYLLLRVEGCIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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