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Report for CCDS33457.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33457.1 Public Homo sapiens 20 DEFB124 24 110 108 CCDS HistoryNCBI Gene:245937Re-query CCDS DB by CCDS ID:33457.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 33457.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317676.3 ENSP00000326309.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317676.3Link to Ensembl Protein Viewer:ENSP00000326309.2Re-query CCDS DB by Nucleotide ID:ENST00000317676Re-query CCDS DB by Protein ID:ENSP00000326309
Original member Current member NCBI NM_001037500.2 NP_001032589.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001037500.2Link to Protein Sequence:NP_001032589.1Re-query CCDS DB by Nucleotide ID:NM_001037500Re-query CCDS DB by Protein ID:NP_001032589Link to BLAST:NP_001032589.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032589.1 71 Q8NES8 71 100% 0 0

Chromosomal Locations for CCDS 33457.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 31465506 31465663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31472956 31473013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (216 nt):
ATGACACAGCTGCTTCTGTTCCTTGTGGCTCTCCTGGTTCTGGGTCATGTGCCATCAGGGAGAAGTGAAT
TCAAACGGTGCTGGAAGGGTCAAGGGGCCTGCCAAACTTACTGCACAAGGCAAGAAACTTACATGCACCT
GTGCCCGGATGCGTCCCTGTGCTGTCTCTCCTATGCATTGAAACCTCCACCGGTCCCCAAGCATGAATAT
GAGTAG

Translation (71 aa):
MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYALKPPPVPKHEY
E


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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