NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14209.1 Public Homo sapiens X CXorf58 24 110 108 CCDS HistoryNCBI Gene:254158Re-query CCDS DB by CCDS ID:14209.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14209.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379211.8 ENSP00000368511.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379211.8Link to Ensembl Protein Viewer:ENSP00000368511.3Re-query CCDS DB by Nucleotide ID:ENST00000379211Re-query CCDS DB by Protein ID:ENSP00000368511
Original member Current member NCBI NM_152761.3 NP_689974.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152761.3Link to Protein Sequence:NP_689974.2Re-query CCDS DB by Nucleotide ID:NM_152761Re-query CCDS DB by Protein ID:NP_689974Link to BLAST:NP_689974.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689974.2 332 Q96LI9 332 100% 0 0

Chromosomal Locations for CCDS 14209.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 23910303 23910418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23911757 23911856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23915700 23915794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23916217 23916328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23927239 23927370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23935196 23935425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23938547 23938700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23939244 23939303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGAATCGTTCCTCAAATGTACCACGTAAAGGTATTCTGAAATCAGGTACAAGATCCTTACAAAAAGTTC
GCAGAGTACATTTCGCAAATGCACGAAATGCAAGATCATTACTATCAATGCTTAAAGACATTTCAGCTCA
AATAATACAGAGGGCTTGGTTATCTCATACAAACAAAATGATATTTCGACTCCTAAAACACGCAATTTGT
GCAGCGGAATTCTATGTAACACATGAAATACTGAAGAAAGTGGCCCCCTTAGAGGCTAAGCTTATTAAGG
ATCCTACTATGCAGTGTAAAATTAGATTCAGATTTAGAGGTGAAACGTTTCCACCTTTCATCGTGTTTAA
AATTTTTCTTCATACTGATGGCCATGGTTACAAGTATTTTAGTGGAAAAAATGTATTAATGCCGTCAAGT
AAGGCAGTGGATGATGCTTGCAAACTAATGGGGGAAAGGAAATTTCACCGTATAATTATGGAAGATGAAC
GTATTTTCCCGAAGTCCAAAGTAACTGATATAATGGATGTTGTCACCATGCAAGATTATGTACAATATCG
CAGTTTTTTCGATGAGGCCCCTGCATTTTCTGGCGGCAGAAATAACAGCTGGCGCAAATTAAATCTTGAA
AATATTCCCAGGACAATGCTAATGTATGACATAGTTCATTATTCAGAGTCTGGAGTGATCTCAAACCGTC
TACGAAATGAAATGAAGTTTCTGTTACAGAGACCAGTAACGCAAGAGATCCATAAGCACCAGCTACGGAT
TGTTTCTGAAATTAGGGGTCCATACTTAACTGTCCAACCTCTATATCGGCCCTACAAACAGCAAAATCAA
GTTAAATTTCTGGGTCGTCGATCCAAGCAAGCTCAAATGAAAGTTGAAAAAATGAGAAAAGTTTATTTGG
CTAAAGAAAAAAATACTTCTGAGGTGACTGAACCAAAAACGGGCCCATCAGGTACAAAGGATAACTATCA
TCTCCACTCCATCTTTTGA

Translation (332 aa):
MNRSSNVPRKGILKSGTRSLQKVRRVHFANARNARSLLSMLKDISAQIIQRAWLSHTNKMIFRLLKHAIC
AAEFYVTHEILKKVAPLEAKLIKDPTMQCKIRFRFRGETFPPFIVFKIFLHTDGHGYKYFSGKNVLMPSS
KAVDDACKLMGERKFHRIIMEDERIFPKSKVTDIMDVVTMQDYVQYRSFFDEAPAFSGGRNNSWRKLNLE
NIPRTMLMYDIVHYSESGVISNRLRNEMKFLLQRPVTQEIHKHQLRIVSEIRGPYLTVQPLYRPYKQQNQ
VKFLGRRSKQAQMKVEKMRKVYLAKEKNTSEVTEPKTGPSGTKDNYHLHSIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH