NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS30988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30988.1 Public Homo sapiens 1 SLC41A1 24 110 108 CCDS HistoryNCBI Gene:254428Re-query CCDS DB by CCDS ID:30988.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30988.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367137.4 ENSP00000356105.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367137.4Link to Ensembl Protein Viewer:ENSP00000356105.3Re-query CCDS DB by Nucleotide ID:ENST00000367137Re-query CCDS DB by Protein ID:ENSP00000356105
Original member Current member NCBI NM_173854.6 NP_776253.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173854.6Link to Protein Sequence:NP_776253.3Re-query CCDS DB by Nucleotide ID:NM_173854Re-query CCDS DB by Protein ID:NP_776253Link to BLAST:NP_776253.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776253.3 513 Q8IVJ1 513 100% 0 0

Chromosomal Locations for CCDS 30988.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 205791533 205791718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205794870 205795018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205795344 205795478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205796924 205797003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205797904 205798051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205798669 205798815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205798957 205799101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205799759 205799830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205800953 205801060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205810070 205810441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1542 nt):
ATGTCCTCTAAGCCAGAGCCGAAGGACGTCCACCAACTGAACGGGACTGGCCCTTCTGCCTCTCCCTGCT
CTTCAGATGGCCCAGGGAGAGAGCCCTTGGCTGGGACCTCAGAGTTCCTGGGGCCTGATGGGGCTGGGGT
AGAGGTGGTGATTGAGTCTCGGGCCAACGCCAAGGGGGTTCGGGAGGAGGACGCCCTGCTGGAGAACGGG
AGCCAGAGCAACGAAAGTGACGACGTCAGCACAGACCGTGGCCCTGCGCCACCTTCCCCGCTCAAGGAGA
CCTCCTTTTCCATCGGGCTGCAAGTACTGTTTCCATTCCTCCTGGCAGGCTTTGGGACCGTGGCTGCTGG
CATGGTGTTGGACATCGTGCAGCACTGGGAAGTCTTCCAGAAGGTGACAGAGGTCTTCATCCTAGTGCCT
GCGCTGCTGGGGCTCAAAGGGAACCTGGAAATGACCCTGGCATCAAGGCTTTCCACTGCAGCCAACATTG
GACACATGGACACACCCAAGGAGCTCTGGCGGATGATCACTGGGAACATGGCCCTCATCCAGGTGCAGGC
CACGGTGGTGGGCTTCCTGGCGTCCATCGCAGCCGTCGTCTTTGGCTGGATCCCTGATGGCCACTTCAGT
ATTCCGCACGCCTTCCTGCTCTGTGCTAGCAGCGTGGCCACAGCCTTCATTGCCTCCCTGGTACTGGGTA
TGATCATGATTGGAGTCATCATTGGCTCTCGCAAGATTGGGATCAACCCAGACAACGTGGCCACACCCAT
TGCTGCCAGCCTGGGCGACCTCATCACCTTGGCGCTGCTCTCAGGCATCAGCTGGGGACTCTACCTGGAA
CTGAATCACTGGCGATACATCTACCCACTGGTGTGTGCTTTCTTTGTGGCCCTGCTGCCTGTCTGGGTGG
TGCTGGCCCGACGAAGTCCAGCCACAAGGGAGGTGTTGTACTCGGGCTGGGAGCCTGTTATCATTGCCAT
GGCCATCAGCAGTGTGGGAGGCCTCATCTTGGACAAGACTGTCTCAGACCCCAACTTTGCTGGGATGGCT
GTCTTCACGCCTGTGATTAATGGTGTTGGGGGCAATCTGGTGGCAGTGCAGGCCAGCCGCATCTCCACCT
TCCTGCACATGAATGGAATGCCCGGAGAGAACTCTGAGCAAGCTCCTCGCCGCTGTCCCAGTCCTTGTAC
CACCTTCTTCAGCCCTGATGTGAATTCTCGCTCAGCCCGGGTCCTCTTCCTCCTCGTGGTCCCAGGACAC
CTGGTGTTCCTCTACACCATCAGCTGTATGCAGGGCGGGCACACCACCCTCACACTCATCTTCATCATCT
TCTATATGACAGCTGCACTGCTCCAGGTGCTGATTCTCCTGTACATCGCAGACTGGATGGTGCACTGGAT
GTGGGGCCGGGGCCTGGACCCGGACAACTTCTCCATCCCATACTTGACTGCTCTGGGGGACCTGCTTGGC
ACTGGGCTCCTAGCACTCAGCTTCCATGTTCTCTGGCTCATAGGGGACCGAGACACGGATGTCGGGGACT
AG

Translation (513 aa):
MSSKPEPKDVHQLNGTGPSASPCSSDGPGREPLAGTSEFLGPDGAGVEVVIESRANAKGVREEDALLENG
SQSNESDDVSTDRGPAPPSPLKETSFSIGLQVLFPFLLAGFGTVAAGMVLDIVQHWEVFQKVTEVFILVP
ALLGLKGNLEMTLASRLSTAANIGHMDTPKELWRMITGNMALIQVQATVVGFLASIAAVVFGWIPDGHFS
IPHAFLLCASSVATAFIASLVLGMIMIGVIIGSRKIGINPDNVATPIAASLGDLITLALLSGISWGLYLE
LNHWRYIYPLVCAFFVALLPVWVVLARRSPATREVLYSGWEPVIIAMAISSVGGLILDKTVSDPNFAGMA
VFTPVINGVGGNLVAVQASRISTFLHMNGMPGENSEQAPRRCPSPCTTFFSPDVNSRSARVLFLLVVPGH
LVFLYTISCMQGGHTTLTLIFIIFYMTAALLQVLILLYIADWMVHWMWGRGLDPDNFSIPYLTALGDLLG
TGLLALSFHVLWLIGDRDTDVGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH