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Report for CCDS15839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15839.1 Public Mus musculus 2 Gbgt1 23 108 98 CCDS HistoryNCBI Gene:227671Re-query CCDS DB by CCDS ID:15839.1Re-query CCDS DB by GeneID:227671See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15839.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028172.1 ENSMUSP00000028172.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028172.1Link to Ensembl Protein Viewer:ENSMUSP00000028172.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000028172Re-query CCDS DB by Protein ID:ENSMUSP00000028172
Original member Current member EBI ENSMUST00000163121.7 ENSMUSP00000127071.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163121.7Link to Ensembl Protein Viewer:ENSMUSP00000127071.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163121Re-query CCDS DB by Protein ID:ENSMUSP00000127071
Original member NCBI NM_139197.2 NP_631936.2 Updated not alive Link to Nucleotide Sequence:NM_139197.2Link to Protein Sequence:NP_631936.2Re-query CCDS DB by Nucleotide ID:NM_139197Re-query CCDS DB by Protein ID:NP_631936
Current member NCBI NM_139197.3 NP_631936.2 Accepted alive Link to Nucleotide Sequence:NM_139197.3Link to Protein Sequence:NP_631936.2Re-query CCDS DB by Nucleotide ID:NM_139197Re-query CCDS DB by Protein ID:NP_631936Link to BLAST:NP_631936.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631936.2 347 Q8VI38 347 100% 0 0

Chromosomal Locations for CCDS 15839.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 28497766 28497836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28498376 28498441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28502067 28502117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28502197 28502232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28503126 28503260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28504711 28505395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGACCCGCCCAAGACTGGCCCAGGGCCTAGCGTTCTTCCTGCTCGGTGGCACAGGTCTCTGGGTCCTGT
GGAAGTTTATCAAGGACTGGCTGCTGGTCTCCTACATACCCTATTACCTCCCCTGCCCAGAGTTCTTCAA
CATGAAGCTGCCCTTCAGGAAGGAGAAACCGTTGCAGCCTGTGACACAGTTACAGTACCCTCAGCCTAAG
CTGCTGGAACACGGACCCACAGAGCTGCTGACACTTACCCCGTGGTTGGCACCCATCGTCTCCGAGGGAA
CCTTTGACCCGGAGCTTCTGAAGAGCATGTACCAGCCGTTGAACCTGACCATTGGCGTCACCGTGTTTGC
CGTGGGGAAGTACACCTGCTTCATTCAGCGCTTCCTGGAGTCAGCTGAAGAGTTCTTTATGCGTGGGTAC
CAAGTACACTATTACCTCTTTACCCATGATCCTACAGCCGTTCCCAGAGTTCCCCTGGGCCCCGGTCGGC
TCCTCAGCATCATCCCTATCCAGGGTTATTCCCGGTGGGAGGAGATCTCCATGCGCCGAATGGAGACCAT
CAACAAACACATTGCCAAGAGAGCCCACAAAGAAGTGGATTACCTCTTCTGTGTCGATGTGGATATGGTC
TTCCGTAACCCATGGGGCCCCGAGACCTTGGGGGATCTAGTGGCTGCCATTCACCCAGGCTATTTTGCTG
TACCTCGCCGGAAATTCCCTTATGAACGCAGGCAAGTTTCCTCTGCCTTTGTGGCAGACAATGAGGGGGA
CTTCTATTATGGTGGGGCACTCTTTGGGGGACGAGTGGCCAGAGTGTATGAGTTTACCCGGGCCTGCCAC
ATGGCCATTCTGGCAGACAAAGCTAACAGCATTATGGCAGCCTGGCAGGAGGAGAGCCACCTGAACCGCC
ACTTCATCTGGCACAAACCATCTAAGGTGCTGTCCCCAGAGTACCTCTGGGATGAAAGGAAGCCTCGGCC
CCGAAGCCTGAAGATGATTCGATTCTCCTCAGTGAAAAAGAATGCCAACTGGCTGAGGACCTAA

Translation (347 aa):
MTRPRLAQGLAFFLLGGTGLWVLWKFIKDWLLVSYIPYYLPCPEFFNMKLPFRKEKPLQPVTQLQYPQPK
LLEHGPTELLTLTPWLAPIVSEGTFDPELLKSMYQPLNLTIGVTVFAVGKYTCFIQRFLESAEEFFMRGY
QVHYYLFTHDPTAVPRVPLGPGRLLSIIPIQGYSRWEEISMRRMETINKHIAKRAHKEVDYLFCVDVDMV
FRNPWGPETLGDLVAAIHPGYFAVPRRKFPYERRQVSSAFVADNEGDFYYGGALFGGRVARVYEFTRACH
MAILADKANSIMAAWQEESHLNRHFIWHKPSKVLSPEYLWDERKPRPRSLKMIRFSSVKKNANWLRT


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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