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Report for CCDS17696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17696.1 Public Mus musculus 3 Ap4b1 23 108 98 CCDS HistoryNCBI Gene:67489Re-query CCDS DB by CCDS ID:17696.1Re-query CCDS DB by GeneID:67489See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17696.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047285.6 ENSMUSP00000044262.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047285.6Link to Ensembl Protein Viewer:ENSMUSP00000044262.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000047285Re-query CCDS DB by Protein ID:ENSMUSP00000044262
Original member Current member EBI ENSMUST00000076599.7 ENSMUSP00000075904.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076599.7Link to Ensembl Protein Viewer:ENSMUSP00000075904.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000076599Re-query CCDS DB by Protein ID:ENSMUSP00000075904
Original member Current member NCBI NM_001163552.1 NP_001157024.1 Accepted alive Link to Nucleotide Sequence:NM_001163552.1Link to Protein Sequence:NP_001157024.1Re-query CCDS DB by Nucleotide ID:NM_001163552Re-query CCDS DB by Protein ID:NP_001157024Link to BLAST:NP_001157024.1
Original member Current member NCBI NM_026193.2 NP_080469.2 Accepted alive Link to Nucleotide Sequence:NM_026193.2Link to Protein Sequence:NP_080469.2Re-query CCDS DB by Nucleotide ID:NM_026193Re-query CCDS DB by Protein ID:NP_080469Link to BLAST:NP_080469.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157024.1 738 Q9WV76 738 100% 0 0
NP_080469.2 738 Q9WV76 738 100% 0 0

Chromosomal Locations for CCDS 17696.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 103809945 103810057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103812085 103812309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103812777 103812907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103813260 103813407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103814825 103815321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103817760 103817843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103818804 103818907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103820254 103820461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103820678 103820959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103821336 103821760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2217 nt):
ATGCCATACCTTGGCTCTGAGGACGTGGTGAAGGAACTGAAGAAGGCTCTGTGTAACCCTCATATTCAGG
CTGATAGGCTGCGCTACCGGAATGTCATCCAGCGAGTTATTAGGCACATGACTCAGGGCTTGGACATGTC
TGATGTTTTCATGGAAATGGTAAAGGCCAGTGCCACTGTAGATATTGTTCAGAAAAAGTTGGTTTATCTG
TATATGGGCACATACGCACCTTTAAAACCAGATCTAGCACTCTTGGCCATCAATACGCTCTGCAAAGACT
GCTCAGACCCCAACCCAATGGTTCGAGGACTGGCACTACGGAGTATGTGTAGCCTCAGGATGCCTGGTGT
GCAGGAATATATCCAGCAGCCTGTTGTTAACGGTCTGCGTGATAAAGCTTCATATGTCAGAAGAGTAGCA
GTCCTCGGCTGTGCCAAAATGCATAATCTTCACGGAGACTCTGAAGTGGATGGTGCTCTCGTCAATGAGT
TGTACAGTCTTCTGCGTGACCAGGATCCAATTGTGGTTGTGAACTGTCTGAGGTCTCTAGAGGAAATTTT
AAAGCAGGAAGGAGGTGTTGTCATTAATAAGCCCATTGCCCACCATCTCTTAAATAGAATGTCAAAACTG
GACCAGTGGGGCCAGGCTGAAGTACTGAACTTTCTGCTCCGCTACCAACCCCGCAGTGAGGAGGAACTGT
TTGATATTCTCAATTTGTTGGACAGCTATCTCAAGAGCAGCAGTACTGGCGTGGTGATGGGAGCCACCAA
ACTCTTTCTGATTTTGGCAAAAAAGTTCCCCCACGTGCAGACTGATGTGCTTGTGCGAGTCAAGGGGCCC
TTGCTGGCCGCCTGCTCTTCAGAGAGCCGTGAGCTCTGTTTTGCTGCTCTCTGCCATGTCCGCCAGGTCT
TGCACAGTTTGCCAGGTCACTTTAGCAGTCACTACAAAAAGTTTTTTTGCTCTTACTCGGAACCCCACTA
CATCAAGCTCCAGAAGGTGGAGGTGCTGTGCGAGCTGGTGAATGACGAGAACGTGCAGCAGGTGCTGGAA
GAGCTGCGTGGCTACTGCACTGACGTGGCTGCTGACTTTGCACAGGCTGCCATCTTCGCCATAGGTAGCA
TTGCCAAGACTTACACAGATCAATGTGTGCAGATTCTAACAGAGTTGCTGGGACTTCGACAAGAACATAT
CACTACTGTGGTCGTGCAGACTTTCCGAGACCTGGTCTGGTTATGCCCTCAGTGTACTGAAGCTGTGTGT
CAGGCTCTGCCCGGCTGTGAGGAGAACATTCAAGACAGTGAGGGGAAACAGGCACTTATTTGGTTACTTG
GGGTCCACGGGGAAAAAATCCCCAATGCTCCTTATGTGTTGGAGGACTTTGTAGACAACGTGAAGTCAGA
GACATTTCCCGCTGTTAAGATGGAGCTACTGACCGCACTGATGCGCCTTGTCCTCTCGCGCCCGGCTGAG
TGCCAGGACATGCTGGGACGGCTGCTGCATTACTGCATAGAGGAAGAAAAGGATATGGCTGTACGGGACC
GGGGTCTCTTCTATTACCGCCTCCTGTTAGTTGGCATTGATAAAGTTAAGCAGATCCTGTGTAGTCCTAA
GTCTGACCCTTCTCTTGGACTTTTGGAGGATCAGCCGGAACGACCAGTAAATAGCTGGGCTTCAGACTTC
AACACACTGGCGCCAGTGTATGGCAGAGCCCACTGGGCAACTATCTCTAAATGCCAGCAGGTAGAGCGGC
ATCGCCTTGAGCTTCCCCACAATGCATCCTTTGCCACATCAGGGCACTTGATTTCCGAGGAGAACAAAGA
AGGTGCACAAGAACCTGATTCTGACACTCTCATGCTGGTCCCCAATCTCCAGCTTACTGCTGAGTATTTT
GAGAAGACGTGGCTTAGCCTCAGAGTTAGTTACCAGCAGGTGTTTCCTTGGCAGGGAGAAGTCCAGCCTG
ACACTCTACAAATGGCTCTAAAAGTAGTGAACATTCAGACCATCGCAATGAGCAGAGCTGGGGCACAGCC
CTGGAAAGCCTACCTCAGTGCTCAGGATGATACTGGCGGCCTTTTCTTAGCTGAATTGCTACTGAAGCCT
GAGAACTCAGAGATGCAAATCTCTGTGAAGCAAAGTAAGGCAAGGACTGAATCCCTGCATGGTTTTGTTT
CTGTCCTGGAAACTGTGATTGGAACAGTTGGAGACATAAAATCTTAA

Translation (738 aa):
MPYLGSEDVVKELKKALCNPHIQADRLRYRNVIQRVIRHMTQGLDMSDVFMEMVKASATVDIVQKKLVYL
YMGTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPVVNGLRDKASYVRRVA
VLGCAKMHNLHGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKL
DQWGQAEVLNFLLRYQPRSEEELFDILNLLDSYLKSSSTGVVMGATKLFLILAKKFPHVQTDVLVRVKGP
LLAACSSESRELCFAALCHVRQVLHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLE
ELRGYCTDVAADFAQAAIFAIGSIAKTYTDQCVQILTELLGLRQEHITTVVVQTFRDLVWLCPQCTEAVC
QALPGCEENIQDSEGKQALIWLLGVHGEKIPNAPYVLEDFVDNVKSETFPAVKMELLTALMRLVLSRPAE
CQDMLGRLLHYCIEEEKDMAVRDRGLFYYRLLLVGIDKVKQILCSPKSDPSLGLLEDQPERPVNSWASDF
NTLAPVYGRAHWATISKCQQVERHRLELPHNASFATSGHLISEENKEGAQEPDSDTLMLVPNLQLTAEYF
EKTWLSLRVSYQQVFPWQGEVQPDTLQMALKVVNIQTIAMSRAGAQPWKAYLSAQDDTGGLFLAELLLKP
ENSEMQISVKQSKARTESLHGFVSVLETVIGTVGDIKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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