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Report for CCDS52164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52164.1 Public Mus musculus 7 Fbxo27 23 108 98 CCDS HistoryNCBI Gene:233040Re-query CCDS DB by CCDS ID:52164.1Re-query CCDS DB by GeneID:233040See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52164.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108281.7 ENSMUSP00000103916.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108281.7Link to Ensembl Protein Viewer:ENSMUSP00000103916.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108281Re-query CCDS DB by Protein ID:ENSMUSP00000103916
Original member Current member NCBI NM_001163702.1 NP_001157174.1 Accepted alive Link to Nucleotide Sequence:NM_001163702.1Link to Protein Sequence:NP_001157174.1Re-query CCDS DB by Nucleotide ID:NM_001163702Re-query CCDS DB by Protein ID:NP_001157174Link to BLAST:NP_001157174.1
Original member Current member NCBI NM_001355157.1 NP_001342086.1 Accepted alive Link to Nucleotide Sequence:NM_001355157.1Link to Protein Sequence:NP_001342086.1Re-query CCDS DB by Nucleotide ID:NM_001355157Re-query CCDS DB by Protein ID:NP_001342086Link to BLAST:NP_001342086.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157174.1 280 Q6DIA9-1 280 100% 0 0
NP_001342086.1 280 Q6DIA9-1 280 100% 0 0

Chromosomal Locations for CCDS 52164.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28693296 28693650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28694731 28694842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28695006 28695101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28696640 28696775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28698239 28698382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGGGTGCCTGGATATCCAGGACCCGGGTCCCGACGCCGGAGCCCGACCCCCAGGAGGTCCTGGACCTGA
GCCGTCTGCCCCCGGAGCTGCTCCTGCTGGTACTGAGCCACGTGCCCCCGCGCACGCTGCTGATGCACTG
CCGCCGAGTGTGCCGCGCCTGGCGCGCCCTGGTAGATGGCCAGGCCCTATGGTTGCTGCTGCTGGCCCGT
GACCACAGCGCAGCGGGCCGCGCCCTGCTGACACTAGCCCGCCGCTGTCTGCCCCCTGCCCACGAAGACA
CGCCCTGCCCGCTGGGCCAATTCTGCGCACTGAGACCGCTAGGACGCAACCTCATCAGCAACCCCTGTGG
CCAAGAAGGCCTGCGCAAATGGATGGTGCGGCACGGTGGGGATGGATGGGTGGTGGAGAAGAACAGGAAA
CCTGTACCTGGGGCCCCTTCACAGACCTGCTTCGTGACTTCCTTCAGCTGGTGTCGCAAGAAGCAGGTCG
TGGACCTGGTGGAGAAGGGTCTGTGGCCAGAGCTGCTGGACAGTGGTGGTGTGGAGATTGCTGTCTCTGA
CTGGTGGGGAGCTCGACATGACAGTGGCTGTAAGTACCGTCTCTTTGTCACGCTTCTTGATGCCCACCAG
AACGTCATAGATAAGTTCTCCGCTGTGCCAGATCCCATTGAACAGTGGAACAATGATATCTACCTGCAGG
TCACCCACGTGTTCTCCGGCATCAGGAGGGGCATACGTTTTGTCTCTTTTGAACACTGGGGCCAGGACAC
ACAGTTCTGGGCTGGCCACTATGGGGCCAGAGTGACGAACTCCAGTGTGATCATACGAGTCTGTCAGTCC
TAG

Translation (280 aa):
MGAWISRTRVPTPEPDPQEVLDLSRLPPELLLLVLSHVPPRTLLMHCRRVCRAWRALVDGQALWLLLLAR
DHSAAGRALLTLARRCLPPAHEDTPCPLGQFCALRPLGRNLISNPCGQEGLRKWMVRHGGDGWVVEKNRK
PVPGAPSQTCFVTSFSWCRKKQVVDLVEKGLWPELLDSGGVEIAVSDWWGARHDSGCKYRLFVTLLDAHQ
NVIDKFSAVPDPIEQWNNDIYLQVTHVFSGIRRGIRFVSFEHWGQDTQFWAGHYGARVTNSSVIIRVCQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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