NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48561.1 Public Mus musculus 10 Msl3l2 23 108 98 CCDS HistoryNCBI Gene:73390Re-query CCDS DB by CCDS ID:48561.1Re-query CCDS DB by GeneID:73390See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48561.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063138.7 ENSMUSP00000051220.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063138.7Link to Ensembl Protein Viewer:ENSMUSP00000051220.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000063138Re-query CCDS DB by Protein ID:ENSMUSP00000051220
Original member Current member NCBI NM_001163833.1 NP_001157305.1 Accepted alive Link to Nucleotide Sequence:NM_001163833.1Link to Protein Sequence:NP_001157305.1Re-query CCDS DB by Nucleotide ID:NM_001163833Re-query CCDS DB by Protein ID:NP_001157305Link to BLAST:NP_001157305.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157305.1 371 G3X992 371 100% 0 0

Chromosomal Locations for CCDS 48561.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 56115181 56116296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGGCCACCCTCGGCTGCGCACCTAAGGATGACGGTGAGGGGAAGGATGAAGGAGGGAGTGATCGAGGTG
ATGGCGACTCAAAGCCTAAAGGCAAGAAAGAAGTGGAACCCCACACAAGACGGGAAGCGGACGAGCGGGC
CATGCGCATCCCCATCCCGGAAGTGCTCCAGCAGCGGCTGGCGGACGACTGTTACTACATCAACCGCAGG
CGGCGGTTGGTGAGGCTGCCTTGCCAGACCAATGTGGGCGCCATCCTTGAGTGCTACGTGCGCCACTTCT
CGGCGAGCGTGCTGGCCTTGGGGGACCGCCGGCCGCAGCCCCAGCGCGCTGCGCCCGAGAGGAGCGTGGG
CCTGTGCCGGGAGATGGCGGACGGGCTGCGCATCACCTTCGACCACGCGCTCCCCTTGGTGCTGCTCTAC
CCTCAGGAACAGGCTCAGTACGAAATGGTCACCTCCTCCACCTTTTTCTTCCCCACTGAGGAGCGAGCCA
GCGATGCTGGCAGGAGCCAGGAGGCGCCCTGGCCGGGCCCGTCGCCCCCGCAGCCCTCGGAGAGCCAGGC
CGTGGCGGGGCCAGCTGCCCCCAAGAGGCGCAGGGCAGAGGCCGAGGCAACGCGGGCTCCCAGGCGATCC
ACCCGCCACAGCACCCACTGCCACTGGCAGGCTGAGGACCGGGCCTCGCCCCAGGCCAAGCGCAGTGTGC
CCAAGCTGTTCCCGCACTTGCAAAAGACACCTGTGCACAGCGCAGCACCGTCCCCCATCGCTCTGACTCC
TGGCAAGGAAGGGAGTGCCATGTTTGCTGGCTTTGAAGGGACAACTGAGGAAATAAATGAGATCCTCTCC
TGGAAGCTTGTGCCAGACAACTACCCTCCAGGACACCAACCGCCTCCTCCCTCCTACATTTATGGCGCGC
AGCATTTACTGCGACTGTTTGTAAAACTTCCAGAGATTCTTGGAAAGATGTCCTTCTCTGAGAAGAATCT
GAAGGCACTACTTAAGCACTTGGATCTCTTTCTAAGGTTCTTAGCAGAATACCAGGCTGACTTCTTCCTG
GAGTCAGCTTATGTCTCTGCCTGTGAGGCGCACTATAGCAGCAAGAACCCCAGGACACTGTGTTAA

Translation (371 aa):
MATLGCAPKDDGEGKDEGGSDRGDGDSKPKGKKEVEPHTRREADERAMRIPIPEVLQQRLADDCYYINRR
RRLVRLPCQTNVGAILECYVRHFSASVLALGDRRPQPQRAAPERSVGLCREMADGLRITFDHALPLVLLY
PQEQAQYEMVTSSTFFFPTEERASDAGRSQEAPWPGPSPPQPSESQAVAGPAAPKRRRAEAEATRAPRRS
TRHSTHCHWQAEDRASPQAKRSVPKLFPHLQKTPVHSAAPSPIALTPGKEGSAMFAGFEGTTEEINEILS
WKLVPDNYPPGHQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHLDLFLRFLAEYQADFFL
ESAYVSACEAHYSSKNPRTLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH