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Report for CCDS4356.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4356.1 Public Homo sapiens 5 GABRA6 24 110 108 CCDS HistoryNCBI Gene:2559Re-query CCDS DB by CCDS ID:4356.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4356.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274545.10 ENSP00000274545.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274545.10Link to Ensembl Protein Viewer:ENSP00000274545.5Re-query CCDS DB by Nucleotide ID:ENST00000274545Re-query CCDS DB by Protein ID:ENSP00000274545
Original member Current member NCBI NM_000811.3 NP_000802.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000811.3Link to Protein Sequence:NP_000802.2Re-query CCDS DB by Nucleotide ID:NM_000811Re-query CCDS DB by Protein ID:NP_000802Link to BLAST:NP_000802.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000802.2 453 Q16445 453 100% 0 0

Chromosomal Locations for CCDS 4356.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 161685990 161686027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161686230 161686348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161686936 161687003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161688949 161689169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161689254 161689336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161689636 161689779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161690201 161690353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161691941 161692200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161701498 161701773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGCGTCGTCTCTGCCCTGGCTGTGCATTATTCTGTGGCTAGAAAATGCCCTAGGGAAACTCGAAGTTG
AAGGCAACTTCTACTCAGAAAACGTCAGTCGGATCCTGGACAACTTGCTTGAAGGCTATGACAATCGGCT
GCGGCCGGGATTTGGAGGTGCTGTCACTGAAGTCAAAACAGACATTTATGTGACCAGTTTTGGGCCCGTG
TCAGATGTGGAGATGGAGTATACGATGGATGTTTTTTTCCGCCAGACCTGGACTGATGAGAGGTTGAAGT
TTGGGGGGCCAACTGAGATTCTGAGTCTGAATAATTTGATGGTCAGTAAAATCTGGACGCCTGACACCTT
TTTCAGAAATGGTAAAAAGTCCATTGCTCACAACATGACAACTCCTAATAAACTCTTCAGAATAATGCAG
AATGGAACCATTTTATACACCATGAGGCTTACCATCAATGCTGACTGTCCCATGAGGCTGGTTAACTTTC
CTATGGATGGGCATGCTTGTCCACTCAAGTTTGGGAGCTATGCTTATCCCAAAAGTGAAATCATATATAC
GTGGAAAAAAGGACCACTTTACTCAGTAGAAGTCCCAGAAGAATCTTCAAGCCTTCTCCAGTATGATCTG
ATTGGACAAACAGTATCTAGTGAGACAATTAAATCTAACACAGGTGAATACGTTATAATGACAGTTTACT
TCCACTTGCAAAGGAAGATGGGCTACTTCATGATACAGATATACACTCCTTGCATTATGACAGTCATTCT
TTCCCAGGTGTCTTTCTGGATTAATAAGGAGTCCGTCCCAGCAAGAACTGTTTTTGGGATCACCACTGTT
TTAACTATGACCACTTTGAGCATCAGTGCCCGGCACTCTTTGCCAAAAGTGTCATATGCCACTGCCATGG
ATTGGTTCATAGCTGTTTGCTTTGCATTCGTCTTCTCTGCGCTTATCGAGTTCGCAGCTGTCAACTACTT
TACCAATCTTCAGACACAGAAGGCCAAAAGGAAGGCACAGTTTGCAGCCCCACCCACAGTGACAATATCA
AAAGCTACTGAACCTTTGGAAGCTGAGATTGTTTTGCATCCTGACTCCAAATATCATCTGAAGAAAAGGA
TCACTTCTCTGTCTTTGCCAATAGTTTCATCTTCCGAGGCCAATAAAGTGCTCACGAGAGCGCCCATCTT
ACAATCAACACCTGTCACACCCCCACCACTCTCGCCAGCCTTTGGAGGCACCAGTAAAATAGACCAGTAT
TCTCGAATTCTCTTCCCAGTTGCATTTGCAGGATTCAACCTTGTGTACTGGGTAGTTTATCTTTCCAAAG
ATACAATGGAAGTCAGTAGCAGTGTTGAATAG

Translation (453 aa):
MASSLPWLCIILWLENALGKLEVEGNFYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSFGPV
SDVEMEYTMDVFFRQTWTDERLKFGGPTEILSLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRIMQ
NGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGPLYSVEVPEESSSLLQYDL
IGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTV
LTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQTQKAKRKAQFAAPPTVTIS
KATEPLEAEIVLHPDSKYHLKKRITSLSLPIVSSSEANKVLTRAPILQSTPVTPPPLSPAFGGTSKIDQY
SRILFPVAFAGFNLVYWVVYLSKDTMEVSSSVE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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