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Report for CCDS33871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33871.1 Public Homo sapiens 3 GK5 24 110 108 CCDS HistoryNCBI Gene:256356Re-query CCDS DB by CCDS ID:33871.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33871.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392993.7 ENSP00000418001.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392993.7Link to Ensembl Protein Viewer:ENSP00000418001.1Re-query CCDS DB by Nucleotide ID:ENST00000392993Re-query CCDS DB by Protein ID:ENSP00000418001
Original member Current member NCBI NM_001039547.3 NP_001034636.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039547.3Link to Protein Sequence:NP_001034636.1Re-query CCDS DB by Nucleotide ID:NM_001039547Re-query CCDS DB by Protein ID:NP_001034636Link to BLAST:NP_001034636.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034636.1 529 Q6ZS86-1 529 100% 0 0

Chromosomal Locations for CCDS 33871.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 142165622 142165770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142170325 142170458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142171419 142171478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142172353 142172456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142177482 142177576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142181461 142181565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142182923 142183049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142185929 142185989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142186194 142186267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142186452 142186513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142187704 142187779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142198802 142198933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142204695 142204788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142213526 142213601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142215599 142215692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142225309 142225455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGTCGGGGCTGCTCACGGACCCGGAGCAGAGAGCGCAGGAGCCGCGGTACCCCGGCTTCGTGCTGGGGC
TGGATGTGGGCAGTTCTGTGATCCGCTGCCACGTCTATGACCGGGCGGCGCGGGTCTGCGGCTCCAGCGT
GCAGAAGGTAGAAAATCTTTATCCTCAAATTGGCTGGGTAGAAATTGATCCTGATGTTCTTTGGATTCAA
TTTGTTGCCGTAATAAAAGAAGCAGTCAAAGCTGCAGGAATACAGATGAATCAAATTGTTGGTCTTGGCA
TTTCAACACAGAGAGCAACTTTTATTACGTGGAACAAGAAAACAGGAAATCATTTTCACAACTTTATAAG
TTGGCAAGACTTAAGAGCTGTTGAACTTGTAAAATCTTGGAATAATTCTCTTCTTATGAAGATATTTCAC
AGTTCTTGCCGAGTGCTTCACTTTTTCACTAGAAGTAAACGACTTTTTACAGCCAGTTTGTTCACTTTCA
CAACCCAGCAGACTTCTTTGAGATTGGTCTGGATTTTACAGAACTTGACTGAGGTGCAAAAGGCAGTTGA
AGAAGAAAATTGCTGCTTTGGGACTATTGATACCTGGTTGTTATATAAGCTCACAAAAGGTTCTGTATAT
GCCACAGATTTTTCAAATGCTAGTACAACTGGACTTTTTGACCCATATAAGATGTGTTGGAGTGGGATGA
TTACCTCTCTAATTTCGATACCACTTTCTCTCCTACCTCCTGTGAGGGACACAAGCCACAATTTTGGATC
AGTGGATGAAGAGATATTTGGTGTGCCTATACCAATAGTTGCCTTGGTTGCTGACCAGCAATCAGCCATG
TTTGGAGAGTGCTGCTTCCAGACAGGTGATGTGAAATTAACCATGGGAACTGGGACATTTTTGGATATTA
ACACTGGAAATAGCCTTCAACAGACTACTGGAGGCTTTTATCCATTAATTGGGTGGAAGATTGGGCAAGA
AGTCGTATGCTTAGCTGAAAGCAATGCAGGAGACACTGGTACTGCCATAAAATGGGCTCAGCAGTTAGAC
CTTTTCACAGATGCTGCTGAGACTGAAAAAATGGCCAAAAGTTTGGAGGATTCTGAAGGAGTTTGTTTTG
TTCCATCTTTTAGTGGATTACAGGCTCCATTAAATGACCCCTGGGCATGTGCCTCTTTTATGGGTTTGAA
GCCTTCTACCAGTAAATACCATCTTGTACGAGCAATATTGGAGTCAATAGCTTTCAGAAACAAACAGTTA
TATGAGATGATGAAGAAAGAGATTCATATTCCTGTAAGAAAAATCCGGGCAGATGGAGGAGTTTGTAAGA
ATGGTTTTGTCATGCAGATGACTTCAGACCTGATTAATGAGAATATAGACAGACCTGCCGACATTGACAT
GTCATGCCTGGGTGCAGCTTCTCTAGCTGGCCTTGCTGTTGGGTTTTGGACTGACAAGGAGGAACTAAAG
AAACTGAGACAAAGTGAAGTGGTTTTCAAGCCACAGAAGAAATGTCAAGAATATGAAATGAGTCTGGAAA
ACTGGGCCAAAGCAGTGAAACGCTCCATGAATTGGTATAACAAGACATAA

Translation (529 aa):
MSGLLTDPEQRAQEPRYPGFVLGLDVGSSVIRCHVYDRAARVCGSSVQKVENLYPQIGWVEIDPDVLWIQ
FVAVIKEAVKAAGIQMNQIVGLGISTQRATFITWNKKTGNHFHNFISWQDLRAVELVKSWNNSLLMKIFH
SSCRVLHFFTRSKRLFTASLFTFTTQQTSLRLVWILQNLTEVQKAVEEENCCFGTIDTWLLYKLTKGSVY
ATDFSNASTTGLFDPYKMCWSGMITSLISIPLSLLPPVRDTSHNFGSVDEEIFGVPIPIVALVADQQSAM
FGECCFQTGDVKLTMGTGTFLDINTGNSLQQTTGGFYPLIGWKIGQEVVCLAESNAGDTGTAIKWAQQLD
LFTDAAETEKMAKSLEDSEGVCFVPSFSGLQAPLNDPWACASFMGLKPSTSKYHLVRAILESIAFRNKQL
YEMMKKEIHIPVRKIRADGGVCKNGFVMQMTSDLINENIDRPADIDMSCLGAASLAGLAVGFWTDKEELK
KLRQSEVVFKPQKKCQEYEMSLENWAKAVKRSMNWYNKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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