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Report for CCDS48179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48179.1 Public Homo sapiens X HSFX2 24 110 108 CCDS HistoryNCBI Gene:100130086Re-query CCDS DB by CCDS ID:48179.1Re-query CCDS DB by GeneID:100130086See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48179.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000598963.3 ENSP00000469223.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000598963.3Link to Ensembl Protein Viewer:ENSP00000469223.1Re-query CCDS DB by Nucleotide ID:ENST00000598963Re-query CCDS DB by Protein ID:ENSP00000469223
Original member Current member NCBI NM_001164415.3 NP_001157887.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001164415.3Link to Protein Sequence:NP_001157887.1Re-query CCDS DB by Nucleotide ID:NM_001164415Re-query CCDS DB by Protein ID:NP_001157887Link to BLAST:NP_001157887.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157887.1 423 Q9UBD0 423 100% 0 0

Chromosomal Locations for CCDS 48179.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 149592592 149593299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 149594137 149594700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGAGGACAAGCGATCATTGAGTATGGCTCGCTGTGAAGAAAGAAATTCGAGGGGACAGGATCATGGCT
TGGAAAGGGTGCCTTTCCCTCCCCAGTTGCAGTCAGAGACCTACCTTCACCCAGCAGATCCTTCCCCTGC
CTGGGACGACCCGGGGTCCACTGGGAGCCCTAACTTGAGGCTGCTGACAGAAGAAATCGCTTTCCAACCT
CTGGCCGAGGAAGCTTCGTTCAGAAGGCCGCACCCTGACGGTGACGTCCCGCCCCAGGGAGAAGATAATC
TCCTCTCCCTCCCCTTTCCACAGAAACTGTGGAGACTGGTCAGCAGCAACCAGTTTTCGTCCATCTGGTG
GGATGACAGTGGGGCTTGTAGAGTGATCAATCAAAAACTCTTTGAAAAGGAGATTCTCAAAAGGGACGTC
GCACACAAAGTGTTTGCCACAACTTCGATAAAGAGCTTCTTCCGCCAGCTAAACTTGTATGGCTTCCGAA
AACGGCGTCAATGCACTTTCAGGACCTTCACCCGCATTTTCTCCGCAAAAAGGCTGGTCTCCATCTTGAA
TAAGTTAGAGTTCTACTGCCATCCTTACTTTCAAAGAGACTCCCCTCACCTCCTCGTGAGGATGAAGAGA
AGAGTGGGTGTCAAGTCTGCACCAAGACATCAGGAGGAGGACAAGCCAGAAGCTGCTGGATCCTGTCTGG
CACCAGCAGACACTGAGCAACAAGATCACACGTCTCCGAATGAGAATGACCAGGTCACACCGCAACACCG
GGAACCGGCCGGTCCCAACACCCAAATCAGGAGTGGCTCTGCTCCACCAGCAACTCCTGTGATGGTGCCT
GATTCCGCCGTGGCGAGTGACAACAGTCCAGTGACCCAGCCGGCCGGCGAGTGGTCAGAGGGCAGCCAGG
CTCACGTCACTCCGGTGGCCGCTGTCCCTGGGCCTGCAGCGCTGCCCTTCCTCTATGTCCCTGGATCTCC
CACTCAGATGAATTCTTACGGGCCTGTGGTGGCCCTTCCCACAGCGTCCCGTAGTACCCTTGCCATGGAC
ACCACAGGACTTCCTGCACCTGGCATGCTGCCCTTTTGCCATCTCTGGGTACCGGTGACCCTAGTGGCTG
CTGGGGCTGCACAGCCTGCTGCCTCCATGGTCATGTTCCCCCATCTCCCAGCTCTGCACCACCATTGCCC
CCACAGCCACCGCACGTCACAGTACATGCCAGCTAGCGATGGGCCCCAGGCGTACCCAGACTACGCAGAC
CAGAGCACATAG

Translation (423 aa):
MEDKRSLSMARCEERNSRGQDHGLERVPFPPQLQSETYLHPADPSPAWDDPGSTGSPNLRLLTEEIAFQP
LAEEASFRRPHPDGDVPPQGEDNLLSLPFPQKLWRLVSSNQFSSIWWDDSGACRVINQKLFEKEILKRDV
AHKVFATTSIKSFFRQLNLYGFRKRRQCTFRTFTRIFSAKRLVSILNKLEFYCHPYFQRDSPHLLVRMKR
RVGVKSAPRHQEEDKPEAAGSCLAPADTEQQDHTSPNENDQVTPQHREPAGPNTQIRSGSAPPATPVMVP
DSAVASDNSPVTQPAGEWSEGSQAHVTPVAAVPGPAALPFLYVPGSPTQMNSYGPVVALPTASRSTLAMD
TTGLPAPGMLPFCHLWVPVTLVAAGAAQPAASMVMFPHLPALHHHCPHSHRTSQYMPASDGPQAYPDYAD
QST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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