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Report for CCDS10858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10858.1 Public Homo sapiens 16 DDX28 24 110 108 CCDS HistoryNCBI Gene:55794Re-query CCDS DB by CCDS ID:10858.1Re-query CCDS DB by GeneID:55794See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10858.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332395.7 ENSP00000332340.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332395.7Link to Ensembl Protein Viewer:ENSP00000332340.6Re-query CCDS DB by Nucleotide ID:ENST00000332395Re-query CCDS DB by Protein ID:ENSP00000332340
Original member Current member NCBI NM_018380.4 NP_060850.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018380.4Link to Protein Sequence:NP_060850.2Re-query CCDS DB by Nucleotide ID:NM_018380Re-query CCDS DB by Protein ID:NP_060850Link to BLAST:NP_060850.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060850.2 540 Q9NUL7 540 100% 0 0

Chromosomal Locations for CCDS 10858.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 68021580 68023202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGGCTCTAACGCGGCCGGTGCGGCTCTTTTCCCTCGTGACTCGGTTGCTCCTGGCGCCGCGACGGGGCC
TC
ACGGTCCGCAGTCCCGACGAACCCCTGCCGGTGGTGCGCATCCCAGTGGCTCTACAGCGGCAGTTGGA
A
CAGCGGCAGAGCAGGCGGCGGAACCTCCCGAGGCCGGTGCTGGTTCGACCCGGACCGCTGCTGGTTTCG
GCG
CGGCGGCCGGAGTTGAACCAGCCGGCGCGCCTCACACTGGGCCGTTGGGAGCGCGCGCCGCTAGCCT
CT
CAAGGCTGGAAGAGTCGACGCGCGCGTCGGGACCACTTCTCCATCGAGCGCGCGCAACAGGAGGCGCC
A
GCGGTGCGAAAGCTCTCGTCTAAGGGCAGCTTTGCTGACCTGGGCCTGGAGCCCCGTGTGCTGCACGCA
CTA
CAGGAGGCTGCGCCTGAAGTCGTTCAGCCCACAACCGTGCAGTCTAGCACCATCCCCTCACTACTTC
GC
GGCCGCCATGTCGTTTGCGCCGCAGAAACCGGCAGTGGCAAGACTCTCAGCTACCTCCTGCCGCTGCT
T
CAACGGCTCTTGGGCCAGCCAAGCCTGGACTCCCTTCCTATCCCCGCGCCCCGAGGCCTGGTCCTTGTT
CCT
TCCCGAGAATTGGCCCAACAGGTGCGGGCTGTGGCCCAACCCTTGGGCCGCTCCTTGGGCCTGCTGG
TG
CGGGACCTGGAGGGAGGCCACGGCATGCGTAGGATCAGGCTGCAGCTGTCCAGACAGCCTTCAGCAGA
T
GTGCTTGTGGCCACTCCAGGGGCTCTGTGGAAGGCCCTGAAAAGTCGACTGATCAGTCTGGAGCAACTC
TCC
TTCTTGGTGTTGGATGAGGCAGACACACTGCTGGATGAAAGCTTCCTGGAACTGGTGGACTACATCT
TA
GAGAAGAGCCACATAGCAGAAGGCCCAGCTGACTTGGAAGACCCCTTCAATCCCAAAGCTCAGTTAGT
G
CTGGTAGGAGCCACATTTCCCGAAGGTGTAGGCCAGTTGCTGAATAAAGTCGCCAGCCCAGATGCTGTC
ACC
ACCATCACCAGCTCCAAGCTCCACTGTATCATGCCTCATGTGAAACAGACATTTCTGAGACTGAAGG
GA
GCAGATAAGGTGGCCGAGCTGGTGCACATCCTCAAGCATCGTGACAGAGCAGAAAGGACTGGTCCCTC
A
GGAACTGTTCTGGTGTTCTGTAATAGCTCCAGCACTGTGAACTGGCTGGGATATATTCTGGATGACCAC
AAA
ATCCAACACCTAAGGTTGCAGGGGCAAATGCCAGCCTTGATGAGGGTAGGAATCTTCCAGTCCTTCC
AG
AAGAGCTCCCGAGACATACTTCTCTGCACAGACATAGCCTCTCGGGGCCTGGACAGCACTGGTGTGGA
G
CTGGTTGTCAATTATGATTTCCCCCCAACGCTGCAAGATTACATCCACAGAGCAGGGAGAGTGGGCCGT
GTG
GGGAGCGAGGTGCCAGGCACCGTCATCAGTTTTGTGACCCATCCCTGGGATGTGAGCCTGGTTCAGA
AG
ATTGAGCTGGCGGCTCGCCGAAGGAGAAGTCTTCCAGGACTAGCATCCTCGGTGAAAGAGCCTTTGCC
C
CAAGCAACCTGA


Translation (540 aa):
MALTRPVRLFSLVTRLLLAPRRGLTVRSPDEPLPVVRIPVALQRQLEQRQSRRRNLPRPVLVRPGPLLVS
A
RRPELNQPARLTLGRWERAPLASQGWKSRRARRDHFSIERAQQEAPAVRKLSSKGSFADLGLEPRVLHA
L
QEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLV
P
SRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRLISLEQL
S
FLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPFNPKAQLVLVGATFPEGVGQLLNKVASPDAV
T
TITSSKLHCIMPHVKQTFLRLKGADKVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDH
K
IQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGR
V
GSEVPGTVISFVTHPWDVSLVQKIELAARRRRSLPGLASSVKEPLPQAT




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 Genome Browser Links:   Ensembl Genome Browser
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