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Report for CCDS47723.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47723.2 Public Homo sapiens 7 KIAA1549 24 110 108 CCDS HistoryNCBI Gene:57670Re-query CCDS DB by CCDS ID:47723.2Re-query CCDS DB by GeneID:57670See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 47723.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and publication data. The update is based on AM989468.1 whose 5' end was identified by 5' RACE in PMID: 18974108. The 5' CDS extension results in an additional 62 aa at the N-terminus of the encoded protein.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47723.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000440172.5 ENSP00000406661.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440172.5Link to Ensembl Protein Viewer:ENSP00000406661.1Re-query CCDS DB by Nucleotide ID:ENST00000440172Re-query CCDS DB by Protein ID:ENSP00000406661
Original member Current member NCBI NM_020910.3 NP_065961.2 Accepted alive Link to Nucleotide Sequence:NM_020910.3Link to Protein Sequence:NP_065961.2Re-query CCDS DB by Nucleotide ID:NM_020910Re-query CCDS DB by Protein ID:NP_065961Link to BLAST:NP_065961.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065961.2 1934 Q9HCM3-2 1934 100% 0 0

Chromosomal Locations for CCDS 47723.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 138837906 138838112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138840133 138840278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138844317 138844474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138852223 138852269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138861139 138861456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138867975 138868128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138869538 138869761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138871157 138871362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138879538 138879653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138881388 138881584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138894342 138894526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138898955 138899132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138903588 138903736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138905022 138905081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138906919 138907102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138908991 138909121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138911146 138911323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138912372 138912460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138916748 138919438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 138981083 138981269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5805 nt):
ATGCCGGGGGCGCGGCGCCGACGCCGAGGCGCGGCCATGGAGGGGAAGCCCCGCGCCGGGGTCGCGCTGG
CCCCGGGGCCGAGCGGCCGACGGCCTTCCGCCCGCTGCGCCCGCCGCCGCCGCCCGGGGCTGCTGCTTCC
TGGCCTCTGGCTGCTGCTGCTGGCCCGGCCGGCCTCGTGCGCCCCAGATGAGCTCTCTCCGGAACAGCAC
AACCTTTCTTTATACTCCATGGAGCTCGTGCTGAAGAAAAGCACTGGGCACAGCGCTGCACAAGTGGCCT
TAACAGAAACTGCTCCCGGCTCCCAGCACAGCAGTCCTCTCCATGTCACAGCCCCGCCGTCTGCCACTAC
TTTTGATACAGCCTTTTTTAACCAAGGAAAACAGACCAAAAGTACAGCAGATCCCAGCATCTTTGTGGCA
ACTTACGTGTCAGTGACGAGTAAAGAGGTGGCCGTCAATGACGATGAGATGGATAACTTTCTGCCAGATA
CTCACTGGACCACTCCACGGATGGTTTCTCCAATACAGTATATCACAGTCAGCCCACCAGGGCTGCCCAG
GGAAGCATTAGAACCTATGCTCACTCCATCATTACCCATGGTTTCTTTACAAGATGAAGAAGTGACATCG
GGCTGGCAGAACACAACGCGACAACCAGCGGCATATGCTGAGTCCGCCAGTCATTTCCACACCTTTCGGT
CAGCTTTTCGCACCTCTGAGGGCATCGTTCCAACTCCTGGCAGGAATTTGGTGCTTTATCCTACTGATGC
TTACAGTCATTTATCAAGCAGGACTCTGCCAGAGATTGTGGCTTCCCTAACAGAGGGTGTGGAAACCACC
CTTTTTTTAAGCTCCCGGTCTTTAATGCCACAGCCGTTAGGCGACGGCATTACTATACCGTTGCCCTCCT
TGGGGGAGGTCTCACAGCCTCCAGAGGAGGTTTGGGCCACAAGTGCAGACAGATACACTGATGTGACCAC
TGTGTTGAGTCAAAGCCTAGAAGAAACCATCTCTCCAAGAACATACCCCACTGTGACTGCATCGCACGCA
GCCCTTGCATTCAGCAGGACACATTCTCCATTGCTTTCAACTCCTCTTGCATTTGCGTCCTCTGCTTCAC
CAACTGATGTTTCATCTAACCCCTTTCTCCCTAGCGACTCCAGCAAAACATCCGAATTGCATAGCAATTC
AGCCCTCCCCGGTCCTGTGGACAACACTCATATCCTGAGCCCGGTGTCCTCATTCAGACCATACACTTGG
TGTGCGGCCTGCACTGTGCCTTCACCTCAGCAAGTTCTGGCCACGAGCCTCATGGAGAAAGACGTGGGAT
CAGGGGATGGTGCCGAGACTCTGTGCATGACCGTGCTGGAAGAAAGCAGCATCTCTCTAATGAGTAGCGT
CGTAGCAGACTTCTCTGAATTTGAGGAAGATCCTCAAGTATTTAATACGCTTTTCCCCTCCAGACCTATC
GTCCCACTTTCTTCTAGATCCATGGAAATCTCAGAGACGAGTGTTGGCATTTCTGCCGAGGTGGATATGA
GTAGTGTTACAACCACACAGGTTCCCCCTGCCCACGGCCGCCTCTCTGTGCCGGCGTCACTTGATCCTAC
TGCTGGCTCCTTGTCTGTTGCTGAAACCCAAGTGACGCCATCCAGCGTGACCACTGCATTTTTCTCGGTC
ATCACCAGCATTCTCCTTGACTCATCTTTCTCTGTCATAGCAAACAAAAACACACCGTCGCTTGCCGTCA
GAGACCCGAGTGTTTTTACGCCTTATAGTCTGGTTCCTTCAGTGGAGTCTTCACTTTTCTCTGACCAAGA
ACGTTCCAGTTTTTCTGAGCATAAACCCAGAGGTGCTTTGGATTTTGCATCCAGCTTTTTCTCAACACCC
CCGCTGGAACTCAGCGGCTCCATCTCTTCGCCTTCGGAAGCACCTGCGTCTCTGTCTCTGATGCCGAGTG
ACTTGTCCCCCTTCACATCTCAGTCTTTTTCTCCCTTGGTTGAGACATTTACATTGTTTGACTCTAGTGA
TCTGCAGTCATCTCAGCTGTCTCTTCCCAGTTCCACAAATCTTGAGTTTTCGCAGCTCCAGCCAAGTTCC
GAGCTGCCTTTAAACACCATCATGTTGCTACCTAGCCGTTCTGAGGTGTCACCATGGTCAAGCTTCCCTT
CTGATTCTCTCGAGTTTGTTGAAGCGTCTACGGTTTCACTGACGGATTCAGAAGCTCATTTTACCTCAGC
TTTCATTGAAACTACCTCCTATCTTGAGTCTTCACTCATTTCCCATGAATCCGCAGTCACTGCACTGGTG
CCCCCCGGCTCTGAGTCTTTTGACATTTTGACTGCCGGGATTCAAGCAACATCACCATTGACCACTGTCC
ACACAACGCCCATTTTAACTGAGTCTTCTTTGTTCTCAACTCTGACACCTCCTGACGACCAAATCAGTGC
TCTAGACGGTCACGTGTCTGTCCTGGCCTCTTTCTCCAAAGCCATTCCCACTGGTACGGTGTTGATCACT
GACGCGTACCTGCCATCAGGATCCTCGTTTGTTTCTGAAGCAACCCCCTTCCCTCTGCCCACAGAGCTGA
CCGTCGTGGGCCCATCACTCACACCCACAGAGGTGCCACTGAACACCTCCACGGAAGTGAGCACAACCAG
CACCGGTGCTGCCACTGGTGGTCCCCTCGACTCCACCCTGATGGGTGACGCCGCAAGTCAGAGCCCCCCA
GAGAGTAGTGCTGCTCCTCCCCTGCCATCCCTGCGTCCCGTGACTGCCTTCACTCTCGAAGCAACAGTCG
ACACACCAACACTGGCTACTGCCAAGCCGCCATATGTTTGTGATATCACAGTCCCCGATGCCTATCTGAT
CACAACTGTGCTGGCCAGAAGAGCTGTGCAGGAGTACATCATTACAGCAATCAAAGAAGTACTGAGGATT
CACTTCAACCGTGCAGTGGAACTGAAGGTTTACGAACTATTTACTGACTTCACTTTTCTGGTAACATCCG
GTCCTTTCGTTTACACGGCAATATCCGTCATAAATGTGCTTATAAACAGTAAGCTTGTCCGTGACCAGAC
TCCTTTAATCCTGTCTGTGAAACCTTCTTTCCTTGTGCCAGAGTCCAGGTTCCAAGTTCAAACAGTACTT
CAGTTTGTGCCTCCGAGTGTGGATACTGGCTTCTGCAACTTCACCCAGCGCATTGAGAAAGGCCTAATGA
CAGCTCTCTTTGAAGTGAGAAAACACCACCAGGGAACGTATAACCTCACGGTGCAGATCTTGAATATCAC
CATCAGTTCCTCAAGGGTGACTCCTCGGCGGGGCCCGGTGAATATCATCTTTGCGGTTAAAAGCACACAG
GGATTTTTGAATGGGTCGGAAGTGAGCGAGCTGCTCAGAAACTTGAGTGTGGTGGAGTTCAGTTTCTATC
TGGGATACCCAGTGCTGCAGATCGCAGAGCCCTTCCAGTATCCACAGCTCAACTTATCTCAGTTGCTGAA
GTCCTCTTGGGTCAGAACAGTTCTCCTGGGCGTCATGGAGAAGCAACTCCAGAATGAAGTGTTTCAAGCC
GAGATGGAACGCAAGCTGGCCCAGCTGCTCAGCGAGGTTTCCACCAGAAGGCGGATGTGGAGAAGGGCCA
CTGTAGCTGCAGGGAACAGTGTGGTGCAGGTGGTAAATGTGTCGAGGCTGGAGGGAGATGACAATCCGGT
ACAGCTCATCTACTTTGTGGAGGATCAAGATGGAGAAAGACTCAGTGCAGTCAAGTCTTCGGACCTGATT
AACAAAATGGACCTCCAGAGAGCAGCCATCATCTTGGGTTACCGAATTCAAGGTGTCATTGCCCAGCCTG
TCGACAGGGTGAAGAGGCCGTCTCCGGAATCCCAGAGCAACAACTTGTGGGTCATTGTTGGCGTGGTCAT
CCCAGTGCTGGTGGTGATGGTGATTGTTGTCATCCTCTACTGGAAACTATGCCGCACAGACAAGCTAGAC
TTTCAGCCTGACACTGTGGCCAACATTCAGCAGCGTCAGAAGCTGCAGATCCCTAGTGTGAAGGGCTTCG
ATTTTGCTAAGCAGCATCTGGGTCAGCACAATAAAGACGACATATTGATTATTCATGAGCCAGCGCCACT
GCCAGGACCTCTGAAGGACCACACCACGCCCTCGGAAAATGGAGACGTGCCAAGCCCCAAGTCAAAGATC
CCTTCCAAGAATGTTCGTCACAGAGGAAGAGTTTCTCCCTCAGATGCTGACTCTACGGTCAGTGAAGAGT
CCAGCGAGAGGGACGCAGGAGATAAGACGCCGGGAGCCGTCAACGATGGCAGGTCCCACAGAGCTCCGCA
GAGCGGGCCACCACTGCCCAGTTCGGGAAATGAGCAGCACTCATCAGCCTCCATCTTCGAGCACGTGGAC
AGGATCTCCCGCCCCCCGGAGGCTAGCCGGCGGGTCCCCAGTAAGATCCAGCTTATCGCCATGCAGCCGA
TCCCGGCACCTCCCGTCCAGCGCCCCTCCCCAGCCGACCGAGTGGCGGAAAGCAATAAAATCAACAAAGA
GATTCAGACCGCGCTGCGGCACAAGTCTGAGATCGAGCACCATCGCAACAAGATCCGCCTGCGCGCCAAG
CGCCGCGGGCACTACGAGTTCCCGGTGGTAGACGACCTGTCCTCGGGCGACACTAAGGAGCGACACCGGG
TGTACCGCAGGGCACAGATGCAGATCGACAAGATCCTGGACCCCACGGCCAGCGTGCCCTCCGTGTTCAT
AGAGCCCAGGAAGAGCTCACGGATAAAACGTTCTCCCAAGCCTCGCCGGAAACACCAGGTCAACGGCTGT
CCTGCCGACGCTGAGAAGGACCGGCTCATCACCACAGACAGCGATGGCACCTACAGGAGGCCCCCCGGCG
TCCACAACTCAGCCTACATCGGATGCCCATCGGATCCTGACCTCCCAGCCGATGTGCAGACACCATCCTC
GGTGGAACTGGGGAGGTATCCAGCCCTTCCCTTCCCGGCCTCCCAGTACATCCCACCCCAGCCGTCCATC
GAGGAGGCACGCCAGACCATGCACTCCCTCCTGGACGACGCCTTTGCCCTCGTGGCCCCCAGCAGCCAGC
CTGCCAGCACCGCAGGTGTAGGCCCCGGAGTCCCACCCGGCCTGCCCGCAAACAGCACCCCTTCCCAGGA
AGAGAGGCGAGCCACCCAGTGGGGGTCCTTCTACAGCCCAGCCCAGACGGCCAACAATCCCTGCAGTAGA
TACGAAGACTATGGAATGACTCCCCCGACGGGTCCATTGCCAAGACCAGGTTTTGGCCCCGGTTTGCTGC
AGTCTACAGAGCTGGTGCCCCCTGACCCTCAGCAGCCACAGGCCTCCGCCGAAGCCCCATTTGCTGCCAG
AGGGATCTACTCGGAGGAGATGCCGTCGGTGGCCCGGCCTCGGCCTGTCGGGGGTACCACAGGCTCCCAG
ATCCAGCACCTGACACAGGTGGGGATTGCCAGCAGAATTGGAGCTCAGCCAGTGGAAATCCCGCCAAGCA
GAGGCAGCCAGTATGGGGGGCCAGGCTGGCCTTCGTACGGGGAGGACGAAGCGGGGCGAAGAGAGGCCGT
GCCAAGGACTTCAGGCAGGGAGCCCTCAGCTCCTTCCGGGAACCTCCCCCACCGGGGACTGCAGGGCCCT
GGGCTGGGTTACCCCACCAGCTCCACGGAAGACCTCCAGCCTGGCCACTCCTCGGCCTCTCTCATCAAAG
CAATCCGCGAGGAGCTCCTCCGGCTCTCCCAGAAACAGAGCACCGTGCAGAACTTCCACAGCTGA

Translation (1934 aa):
MPGARRRRRGAAMEGKPRAGVALAPGPSGRRPSARCARRRRPGLLLPGLWLLLLARPASCAPDELSPEQH
NLSLYSMELVLKKSTGHSAAQVALTETAPGSQHSSPLHVTAPPSATTFDTAFFNQGKQTKSTADPSIFVA
TYVSVTSKEVAVNDDEMDNFLPDTHWTTPRMVSPIQYITVSPPGLPREALEPMLTPSLPMVSLQDEEVTS
GWQNTTRQPAAYAESASHFHTFRSAFRTSEGIVPTPGRNLVLYPTDAYSHLSSRTLPEIVASLTEGVETT
LFLSSRSLMPQPLGDGITIPLPSLGEVSQPPEEVWATSADRYTDVTTVLSQSLEETISPRTYPTVTASHA
ALAFSRTHSPLLSTPLAFASSASPTDVSSNPFLPSDSSKTSELHSNSALPGPVDNTHILSPVSSFRPYTW
CAACTVPSPQQVLATSLMEKDVGSGDGAETLCMTVLEESSISLMSSVVADFSEFEEDPQVFNTLFPSRPI
VPLSSRSMEISETSVGISAEVDMSSVTTTQVPPAHGRLSVPASLDPTAGSLSVAETQVTPSSVTTAFFSV
ITSILLDSSFSVIANKNTPSLAVRDPSVFTPYSLVPSVESSLFSDQERSSFSEHKPRGALDFASSFFSTP
PLELSGSISSPSEAPASLSLMPSDLSPFTSQSFSPLVETFTLFDSSDLQSSQLSLPSSTNLEFSQLQPSS
ELPLNTIMLLPSRSEVSPWSSFPSDSLEFVEASTVSLTDSEAHFTSAFIETTSYLESSLISHESAVTALV
PPGSESFDILTAGIQATSPLTTVHTTPILTESSLFSTLTPPDDQISALDGHVSVLASFSKAIPTGTVLIT
DAYLPSGSSFVSEATPFPLPTELTVVGPSLTPTEVPLNTSTEVSTTSTGAATGGPLDSTLMGDAASQSPP
ESSAAPPLPSLRPVTAFTLEATVDTPTLATAKPPYVCDITVPDAYLITTVLARRAVQEYIITAIKEVLRI
HFNRAVELKVYELFTDFTFLVTSGPFVYTAISVINVLINSKLVRDQTPLILSVKPSFLVPESRFQVQTVL
QFVPPSVDTGFCNFTQRIEKGLMTALFEVRKHHQGTYNLTVQILNITISSSRVTPRRGPVNIIFAVKSTQ
GFLNGSEVSELLRNLSVVEFSFYLGYPVLQIAEPFQYPQLNLSQLLKSSWVRTVLLGVMEKQLQNEVFQA
EMERKLAQLLSEVSTRRRMWRRATVAAGNSVVQVVNVSRLEGDDNPVQLIYFVEDQDGERLSAVKSSDLI
NKMDLQRAAIILGYRIQGVIAQPVDRVKRPSPESQSNNLWVIVGVVIPVLVVMVIVVILYWKLCRTDKLD
FQPDTVANIQQRQKLQIPSVKGFDFAKQHLGQHNKDDILIIHEPAPLPGPLKDHTTPSENGDVPSPKSKI
PSKNVRHRGRVSPSDADSTVSEESSERDAGDKTPGAVNDGRSHRAPQSGPPLPSSGNEQHSSASIFEHVD
RISRPPEASRRVPSKIQLIAMQPIPAPPVQRPSPADRVAESNKINKEIQTALRHKSEIEHHRNKIRLRAK
RRGHYEFPVVDDLSSGDTKERHRVYRRAQMQIDKILDPTASVPSVFIEPRKSSRIKRSPKPRRKHQVNGC
PADAEKDRLITTDSDGTYRRPPGVHNSAYIGCPSDPDLPADVQTPSSVELGRYPALPFPASQYIPPQPSI
EEARQTMHSLLDDAFALVAPSSQPASTAGVGPGVPPGLPANSTPSQEERRATQWGSFYSPAQTANNPCSR
YEDYGMTPPTGPLPRPGFGPGLLQSTELVPPDPQQPQASAEAPFAARGIYSEEMPSVARPRPVGGTTGSQ
IQHLTQVGIASRIGAQPVEIPPSRGSQYGGPGWPSYGEDEAGRREAVPRTSGREPSAPSGNLPHRGLQGP
GLGYPTSSTEDLQPGHSSASLIKAIREELLRLSQKQSTVQNFHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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