NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12012.1 Public Homo sapiens 18 GALR1 24 110 108 CCDS HistoryNCBI Gene:2587Re-query CCDS DB by CCDS ID:12012.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12012.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299727.5 ENSP00000299727.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299727.5Link to Ensembl Protein Viewer:ENSP00000299727.3Re-query CCDS DB by Nucleotide ID:ENST00000299727Re-query CCDS DB by Protein ID:ENSP00000299727
Original member Current member NCBI NM_001480.4 NP_001471.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001480.4Link to Protein Sequence:NP_001471.2Re-query CCDS DB by Nucleotide ID:NM_001480Re-query CCDS DB by Protein ID:NP_001471Link to BLAST:NP_001471.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001471.2 349 P47211 349 100% 0 0

Chromosomal Locations for CCDS 12012.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 77250549 77251214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77256158 77256223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77268585 77268902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGGAGCTGGCGGTCGGGAACCTCAGCGAGGGCAACGCGAGCTGGCCGGAGCCCCCCGCCCCGGAGCCCG
GGCCGCTGTTCGGCATCGGCGTGGAGAACTTCGTCACGCTGGTGGTGTTCGGCCTGATCTTCGCGCTGGG
TGTGCTGGGCAACAGCCTAGTGATCACCGTGCTGGCGCGCAGCAAGCCGGGCAAGCCGCGGAGCACCACC
AACCTGTTCATCCTCAACCTGAGCATCGCCGACCTGGCCTACCTGCTCTTCTGCATCCCCTTCCAGGCCA
CCGTGTACGCGCTGCCCACCTGGGTGCTGGGCGCCTTCATCTGCAAGTTCATCCACTACTTCTTCACCGT
GTCCATGCTGGTGAGCATCTTCACCCTGGCCGCGATGTCCGTGGACCGCTACGTGGCCATCGTGCACTCG
CGGCGCTCCTCCTCCCTCAGGGTGTCCCGCAACGCGCTGCTGGGCGTGGGCTGCATCTGGGCGCTGTCCA
TTGCCATGGCCTCGCCCGTGGCCTACCACCAGGGCCTCTTCCACCCGCGCGCCAGCAACCAGACCTTCTG
CTGGGAGCAGTGGCCCGACCCTCGCCACAAGAAGGCCTACGTGGTGTGCACCTTCGTCTTCGGCTACCTG
CTGCCGCTCCTGCTCATCTGCTTCTGCTATGCCAAGGTCCTTAATCACTTGCATAAAAAGTTGAAGAACA
TGTCAAAGAAGTCTGAAGCATCCAAGAAAAAGACTGCACAGACAGTTCTGGTGGTGGTTGTGGTGTTTGG
AATCTCCTGGCTGCCGCACCACATCATCCATCTCTGGGCTGAGTTTGGAGTTTTCCCGCTGACGCCGGCT
TCCTTCCTCTTCAGAATCACCGCCCACTGCCTGGCGTACAGCAATTCCTCCGTGAATCCTATCATTTATG
CATTTCTCTCTGAAAATTTCAGGAAGGCCTATAAACAAGTGTTCAAGTGTCACATTCGCAAAGATTCACA
CCTGAGTGATACTAAAGAAAGTAAAAGTCGAATAGACACCCCACCATCAACCAATTGTACTCATGTGTGA

Translation (349 aa):
MELAVGNLSEGNASWPEPPAPEPGPLFGIGVENFVTLVVFGLIFALGVLGNSLVITVLARSKPGKPRSTT
NLFILNLSIADLAYLLFCIPFQATVYALPTWVLGAFICKFIHYFFTVSMLVSIFTLAAMSVDRYVAIVHS
RRSSSLRVSRNALLGVGCIWALSIAMASPVAYHQGLFHPRASNQTFCWEQWPDPRHKKAYVVCTFVFGYL
LPLLLICFCYAKVLNHLHKKLKNMSKKSEASKKKTAQTVLVVVVVFGISWLPHHIIHLWAEFGVFPLTPA
SFLFRITAHCLAYSNSSVNPIIYAFLSENFRKAYKQVFKCHIRKDSHLSDTKESKSRIDTPPSTNCTHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH