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Report for CCDS20083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20083.1 Public Mus musculus 6 Or2a25 23 108 98 CCDS HistoryNCBI Gene:258990Re-query CCDS DB by CCDS ID:20083.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20083.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055763.3 ENSMUSP00000052312.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055763.3Link to Ensembl Protein Viewer:ENSMUSP00000052312.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000055763Re-query CCDS DB by Protein ID:ENSMUSP00000052312
Original member Current member EBI ENSMUST00000216408.1 ENSMUSP00000149325.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216408.1Link to Ensembl Protein Viewer:ENSMUSP00000149325.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216408Re-query CCDS DB by Protein ID:ENSMUSP00000149325
Original member Current member NCBI NM_146988.1 NP_667199.1 Accepted alive Link to Nucleotide Sequence:NM_146988.1Link to Protein Sequence:NP_667199.1Re-query CCDS DB by Nucleotide ID:NM_146988Re-query CCDS DB by Protein ID:NP_667199Link to BLAST:NP_667199.1

Chromosomal Locations for CCDS 20083.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42911525 42912457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGGGGGAAATCAGACCTTGATCACACAGTTCATCCTCCTGGGATTTCCTCTCAGCCCGAGGATGCAGA
TGCTCCTCTTTGCCCTCTTCTCCCTGTTCTATGCCTTCACCCTGCTGGGAAATGGGACCATCCTGGGACT
TATCTGCCTGGACTCCAGACTCCACACTCCCATGTACTTCTTTCTGTCTCACCTGGCCATCGTTGACATT
GCCTATGCCTGCAACACAGTGCCCCAGATGCTGGTAAACCTCATGGATCCAGCCAAGCCAATCTCTTTCG
CTGGCTGCATGACACAGACCTTTCTCTTTTTGACGTTTGCACACACGGAATGTCTCCTACTGGTGGTGAT
GTCCTATGATCGATATGTAGCCATCTGCCACCCACTCCGATATACTGCTATCATGAGCTGGAGAGTTTGT
GTTATCCTGGTGCTGACTTCCTGGATTTTAGGAGTACTCTTGGCCCTGGTCCATCTAGTATTGTTGTTAC
CATTACCCTTCTGCGGCTCACAAAAAGTGAATCACTTTTTCTGTGAAATTATAGCTGTTCTCAAACTTGC
TTGTTCAGATACCCGCATCAATGAGTTAATGGTTTTGGCTGGGGCTGTGTCTGTGCTTGTCGGACCATTT
TCTTCAATTGTAGTCTCTTATGCTCATATTCTGTGTGCCATCCTGAAGATTAAGTCACAGCAGGGGCGCC
AGAAAGCCTTCTCCACTTGCTCCTCTCATCTCTGTGTTGTTGGACTCTTTTATGGTACAGCCATTGTCAT
GTACATTGGGCCTCAACACGGGAAGTCCAATGAGCAGAAGAAATATCTCTTGCTATTCCATAGCCTTTTT
AATCCTATGCTCAACCCCCTGATCTATAGTCTGAGGAACAAAGAGGTCAAAAGTGCTCTGAAGAGGACAC
TCTTAAAGGAGGACACCTCTTGA

Translation (310 aa):
MGGNQTLITQFILLGFPLSPRMQMLLFALFSLFYAFTLLGNGTILGLICLDSRLHTPMYFFLSHLAIVDI
AYACNTVPQMLVNLMDPAKPISFAGCMTQTFLFLTFAHTECLLLVVMSYDRYVAICHPLRYTAIMSWRVC
VILVLTSWILGVLLALVHLVLLLPLPFCGSQKVNHFFCEIIAVLKLACSDTRINELMVLAGAVSVLVGPF
SSIVVSYAHILCAILKIKSQQGRQKAFSTCSSHLCVVGLFYGTAIVMYIGPQHGKSNEQKKYLLLFHSLF
NPMLNPLIYSLRNKEVKSALKRTLLKEDTS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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