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Report for CCDS4820.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4820.2 Public Homo sapiens 6 PXT1 24 110 108 CCDS HistoryNCBI Gene:222659Re-query CCDS DB by CCDS ID:4820.2Re-query CCDS DB by GeneID:222659See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4820.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000454782.3 ENSP00000419944.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000454782.3Link to Ensembl Protein Viewer:ENSP00000419944.1Re-query CCDS DB by Nucleotide ID:ENST00000454782Re-query CCDS DB by Protein ID:ENSP00000419944
Original member Current member NCBI NM_152990.4 NP_694535.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152990.4Link to Protein Sequence:NP_694535.2Re-query CCDS DB by Nucleotide ID:NM_152990Re-query CCDS DB by Protein ID:NP_694535Link to BLAST:NP_694535.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694535.2 134 Q8NFP0 134 100% 0 0

Chromosomal Locations for CCDS 4820.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 36391770 36391874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36400454 36400584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36425914 36426082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGAAGAAAAAACATGATGGCATTGTTTATGAAACTAAAGAAGTTCTCAATCCATCTCCCAAAGTAACAC
ATTGTTGCAAATCACTGTGGTTAAAATACAGTTTTCAGAAGGCATACATGACCCAACTTGTCAGCTCCCA
GCCAGTTCCAGCCATGTCAAGGAACCCAGATCATAATCTACTTTCTCAGCCCAAGGAGCATAGCATTGTT
CAGAAGCATCACCAGGAGGAAATAATTCACAAGTTGGCCATGCAGCTGAGACACATTGGGGACAACATTG
ATCATAGGATGGTTCGAGAGGATCTTCAACAGGATGGCAGAGATGCACTAGATCATTTTGTCTTCTTTTT
CTTTAGAAGAGTTCAGGTGTTGCTGCATTTTTTCTGGAACAACCATTTGCTGTAA

Translation (134 aa):
MKKKHDGIVYETKEVLNPSPKVTHCCKSLWLKYSFQKAYMTQLVSSQPVPAMSRNPDHNLLSQPKEHSIV
QKHHQEEIIHKLAMQLRHIGDNIDHRMVREDLQQDGRDALDHFVFFFFRRVQVLLHFFWNNHLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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