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Report for CCDS6760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6760.1 Public Homo sapiens 9 NIPSNAP3A 24 110 108 CCDS HistoryNCBI Gene:25934Re-query CCDS DB by CCDS ID:6760.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6760.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374767.5 ENSP00000363899.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374767.5Link to Ensembl Protein Viewer:ENSP00000363899.4Re-query CCDS DB by Nucleotide ID:ENST00000374767Re-query CCDS DB by Protein ID:ENSP00000363899
Original member Current member NCBI NM_015469.3 NP_056284.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015469.3Link to Protein Sequence:NP_056284.1Re-query CCDS DB by Nucleotide ID:NM_015469Re-query CCDS DB by Protein ID:NP_056284Link to BLAST:NP_056284.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056284.1 247 Q9UFN0 247 100% 0 0

Chromosomal Locations for CCDS 6760.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 104747793 104747852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104750956 104751166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104752906 104753064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104754551 104754700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104759085 104759171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104759262 104759338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGCTCGTCCTCAGAAGCGCCCTGACTCGGGCGCTGGCCTCACGGACGCTGGCGCCTCAGATGTGCTCAT
CTTTTGCTACGGGACCCAGACAATACGATGGAATATTCTATGAATTTCGTTCTTATTACCTTAAGCCCTC
AAAGATGAATGAGTTCCTGGAAAATTTTGAGAAAAACGCTCATCTTCGGACAGCTCACTCTGAATTGGTT
GGATACTGGAGTGTAGAATTTGGAGGCAGAATGAATACAGTGTTTCATATTTGGAAGTATGATAATTTTG
CTCATCGAACTGAAGTTCGGAAAGCCTTGGCCAAAGATAAGGAATGGCAAGAACAATTCCTCATTCCAAA
TTTGGCTCTCATTGATAAACAAGAGAGTGAGATTACTTATCTGGTACCATGGTGCAAATTAGAAAAACCT
CCAAAAGAAGGAGTCTATGAACTGGCCACTTTTCAGATGAAACCTGGTGGGCCAGCTCTGTGGGGTGATG
CATTTAAAAGGGCAGTTCATGCTCATGTCAATCTAGGCTACACAAAACTAGTTGGAGTGTTCCACACAGA
GTACGGAGCACTCAACAGAGTTCATGTTCTTTGGTGGAATGAGAGTGCAGATAGTCGTGCAGCTGGGAGA
CATAAGTCCCATGAGGATCCCAGAGTTGTGGCAGCTGTTCGGGAAAGTGTCAACTACCTAGTATCTCAGC
AGAATATGCTTCTGATTCCTACATCGTTTTCACCACTGAAATAG

Translation (247 aa):
MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEFRSYYLKPSKMNEFLENFEKNAHLRTAHSELV
GYWSVEFGGRMNTVFHIWKYDNFAHRTEVRKALAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKP
PKEGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNRVHVLWWNESADSRAAGR
HKSHEDPRVVAAVRESVNYLVSQQNMLLIPTSFSPLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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