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Report for CCDS8246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8246.1 Public Homo sapiens 11 TSKU 24 110 108 CCDS HistoryNCBI Gene:25987Re-query CCDS DB by CCDS ID:8246.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8246.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333090.5 ENSP00000332668.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333090.5Link to Ensembl Protein Viewer:ENSP00000332668.4Re-query CCDS DB by Nucleotide ID:ENST00000333090Re-query CCDS DB by Protein ID:ENSP00000332668
Original member Current member EBI ENST00000527881.1 ENSP00000434847.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527881.1Link to Ensembl Protein Viewer:ENSP00000434847.1Re-query CCDS DB by Nucleotide ID:ENST00000527881Re-query CCDS DB by Protein ID:ENSP00000434847
Original member Current member EBI ENST00000612930.1 ENSP00000482145.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612930.1Link to Ensembl Protein Viewer:ENSP00000482145.1Re-query CCDS DB by Nucleotide ID:ENST00000612930Re-query CCDS DB by Protein ID:ENSP00000482145
Original member Current member NCBI NM_001258210.2 NP_001245139.1 Accepted alive Link to Nucleotide Sequence:NM_001258210.2Link to Protein Sequence:NP_001245139.1Re-query CCDS DB by Nucleotide ID:NM_001258210Re-query CCDS DB by Protein ID:NP_001245139Link to BLAST:NP_001245139.1
Original member Current member NCBI NM_001318478.2 NP_001305407.1 Accepted alive Link to Nucleotide Sequence:NM_001318478.2Link to Protein Sequence:NP_001305407.1Re-query CCDS DB by Nucleotide ID:NM_001318478Re-query CCDS DB by Protein ID:NP_001305407Link to BLAST:NP_001305407.1
Original member Current member NCBI NM_001318479.2 NP_001305408.1 Accepted alive Link to Nucleotide Sequence:NM_001318479.2Link to Protein Sequence:NP_001305408.1Re-query CCDS DB by Nucleotide ID:NM_001318479Re-query CCDS DB by Protein ID:NP_001305408Link to BLAST:NP_001305408.1
Original member Current member NCBI NM_015516.4 NP_056331.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015516.4Link to Protein Sequence:NP_056331.2Re-query CCDS DB by Nucleotide ID:NM_015516Re-query CCDS DB by Protein ID:NP_056331Link to BLAST:NP_056331.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245139.1 353 Q8WUA8 353 100% 0 0
NP_001305407.1 353 Q8WUA8 353 100% 0 0
NP_001305408.1 353 Q8WUA8 353 100% 0 0
NP_056331.2 353 Q8WUA8 353 100% 0 0

Chromosomal Locations for CCDS 8246.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76795617 76796678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGCCGTGGCCCCTGCTGCTGCTGCTGGCCGTGAGTGGGGCCCAGACAACCCGGCCATGCTTCCCCGGGT
GCCAATGCGAGGTGGAGACCTTCGGCCTTTTCGACAGCTTCAGCCTGACTCGGGTGGATTGTAGCGGCCT
GGGCCCCCACATCATGCCGGTGCCCATCCCTCTGGACACAGCCCACTTGGACCTGTCCTCCAACCGGCTG
GAGATGGTGAATGAGTCGGTGTTGGCGGGGCCGGGCTACACGACGTTGGCTGGCCTGGATCTCAGCCACA
ACCTGCTCACCAGCATCTCACCCACTGCCTTCTCCCGCCTTCGCTACCTGGAGTCGCTTGACCTCAGCCA
CAATGGCCTGACAGCCCTGCCAGCCGAGAGCTTCACCAGCTCACCCCTGAGCGACGTGAACCTTAGCCAC
AACCAGCTCCGGGAGGTCTCAGTGTCTGCCTTCACGACGCACAGTCAGGGCCGGGCACTACACGTGGACC
TCTCCCACAACCTCATTCACCGCCTCGTGCCCCACCCCACGAGGGCCGGCCTGCCTGCGCCCACCATTCA
GAGCCTGAACCTGGCCTGGAACCGGCTCCATGCCGTGCCCAACCTCCGAGACTTGCCCCTGCGCTACCTG
AGCCTGGATGGGAACCCTCTAGCTGTCATTGGTCCGGGTGCCTTCGCGGGGCTGGGAGGCCTTACACACC
TGTCTCTGGCCAGCCTGCAGAGGCTCCCTGAGCTGGCGCCCAGTGGCTTCCGTGAGCTACCGGGCCTGCA
GGTCCTGGACCTGTCGGGCAACCCCAAGCTTAACTGGGCAGGAGCTGAGGTGTTTTCAGGCCTGAGCTCC
CTGCAGGAGCTGGACCTTTCGGGCACCAACCTGGTGCCCCTGCCTGAGGCGCTGCTCCTCCACCTCCCGG
CACTGCAGAGCGTCAGCGTGGGCCAGGATGTGCGGTGCCGGCGCCTGGTGCGGGAGGGCACCTACCCCCG
GAGGCCTGGCTCCAGCCCCAAGGTGGCCCTGCACTGCGTAGACACCCGGGATTCTGCTGCCAGGGGCCCC
ACCATCTTGTGA

Translation (353 aa):
MPWPLLLLLAVSGAQTTRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIMPVPIPLDTAHLDLSSNRL
EMVNESVLAGPGYTTLAGLDLSHNLLTSISPTAFSRLRYLESLDLSHNGLTALPAESFTSSPLSDVNLSH
NQLREVSVSAFTTHSQGRALHVDLSHNLIHRLVPHPTRAGLPAPTIQSLNLAWNRLHAVPNLRDLPLRYL
SLDGNPLAVIGPGAFAGLGGLTHLSLASLQRLPELAPSGFRELPGLQVLDLSGNPKLNWAGAEVFSGLSS
LQELDLSGTNLVPLPEALLLHLPALQSVSVGQDVRCRRLVREGTYPRRPGSSPKVALHCVDTRDSAARGP
TIL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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