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Report for CCDS17167.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17167.1 Public Mus musculus 2 Ss18l1 23 108 98 CCDS HistoryNCBI Gene:269397Re-query CCDS DB by CCDS ID:17167.1Re-query CCDS DB by GeneID:269397See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17167.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041126.8 ENSMUSP00000041288.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041126.8Link to Ensembl Protein Viewer:ENSMUSP00000041288.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000041126Re-query CCDS DB by Protein ID:ENSMUSP00000041288
Original member Current member NCBI NM_178750.5 NP_848865.4 Accepted alive Link to Nucleotide Sequence:NM_178750.5Link to Protein Sequence:NP_848865.4Re-query CCDS DB by Nucleotide ID:NM_178750Re-query CCDS DB by Protein ID:NP_848865Link to BLAST:NP_848865.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848865.4 402 Q8BW22 402 100% 0 0

Chromosomal Locations for CCDS 17167.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 180042800 180042868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180052464 180052540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180053309 180053393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180055019 180055163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180055701 180055898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180057585 180057749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180058088 180058189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180059336 180059428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180061910 180062029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180063271 180063398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180067332 180067358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGTCCGTGGCCTTCGCGTCGGCGCGGCCGAGAGGCAAAGGGGAGGTCACTCAGCAGACCATCCAGAAGA
TGCTGGATGAGAACCACCACCTGATCCAGTGCATCCTGGACTACCAGAGCAAGGGCAAGACCGCCGAGTG
CACGCAGTACCAGCAGATCCTGCACCGGAACCTGGTCTACCTAGCCACCATAGCAGACTCCAATCAGAAC
ATGCAGTCCCTGCTTCCCGCGCCTCCAACACAGAACATGAACCTCGGGCCCGGAGCACTGAGTCAGAGTG
GTTCCAGCCAGGGCCTGCACCCCCAGGGCAGCCTCAGCGATACCGTCAGCACAGGCCTGCCCCCCGCCTC
CCTCATGCAGGGCCAGATCGGTAACGGTCCAAACCACGTGTCCATGCAGCAGACGGCTCAGAGCACACTG
CCCACAACCTCCATGAGCTTGTCAGGCAGTGGCCATGGTACTGGCCCTGGGTACAGCCACTCGGGGCCTA
CCTCGCAGAGTGTCCCCATGCAAGGCCAAGGTGCCATCAGCAACTATGTGTCTCGGACCAACATCAACAT
GCAGTCTAACCCAGTCTCCATGATGCACCAGCAGGCAGCCACGTCCCACTACAACTCAGCACAGGGTGGA
AGCCAGCATTACCAGGGCCAGGCACCCATTGCCATGATGGGCCAGGGTGGCCAAGGAGGCAGCATGATGG
GGCAGCGGCCCATGGCGCCCTACAGACCCTCCCAGCAAGGCTCTTCCCAGCAGTACCTGGGCCAAGAGGA
GTACTACAGCGAACAGTACAGCCACAGCCAGGGCTCCGCAGAGCCCATGAGTCAACAGTACTACCCGGAT
GGCCACGGTGACTACGCCTATCAGCAGTCGTCCTACACAGAGCAGAGCTACGACCGCTCCTTTGAGGATC
CCACACAGCACTACTACGAGGGGGGAAACTCCCAGTACAGTCAGCAGCAGGCTGGGTACCAGCAGGGCAC
AGCACAGCAGCAGACCTACTCCCAGCAACAGTATCCCAACCAGCAGAGCTACCCGGGGCAGCAGCAGGGC
TACGGTCCTGCCCAGGGAGCCCCCTCACAGTACTCAAGCTACCAGCAAGGACAAGGTCAGCAGTATGGAA
GCTACAGAACATCGCAGACGGGACCTTCTGCCCAGCAGCAGCGGCCTTACGGCTATGAACAGGGCCAGTA
TGGAAATTACCAGCAATAA

Translation (402 aa):
MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVYLATIADSNQN
MQSLLPAPPTQNMNLGPGALSQSGSSQGLHPQGSLSDTVSTGLPPASLMQGQIGNGPNHVSMQQTAQSTL
PTTSMSLSGSGHGTGPGYSHSGPTSQSVPMQGQGAISNYVSRTNINMQSNPVSMMHQQAATSHYNSAQGG
SQHYQGQAPIAMMGQGGQGGSMMGQRPMAPYRPSQQGSSQQYLGQEEYYSEQYSHSQGSAEPMSQQYYPD
GHGDYAYQQSSYTEQSYDRSFEDPTQHYYEGGNSQYSQQQAGYQQGTAQQQTYSQQQYPNQQSYPGQQQG
YGPAQGAPSQYSSYQQGQGQQYGSYRTSQTGPSAQQQRPYGYEQGQYGNYQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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