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Report for CCDS47272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47272.1 Public Homo sapiens 5 LRRTM2 24 110 108 CCDS HistoryNCBI Gene:26045Re-query CCDS DB by CCDS ID:47272.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47272.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274711.7 ENSP00000274711.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274711.7Link to Ensembl Protein Viewer:ENSP00000274711.5Re-query CCDS DB by Nucleotide ID:ENST00000274711Re-query CCDS DB by Protein ID:ENSP00000274711
Original member Current member NCBI NM_015564.3 NP_056379.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015564.3Link to Protein Sequence:NP_056379.1Re-query CCDS DB by Nucleotide ID:NM_015564Re-query CCDS DB by Protein ID:NP_056379Link to BLAST:NP_056379.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056379.1 516 O43300 516 100% 0 0

Chromosomal Locations for CCDS 47272.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138873010 138874556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138874908 138874911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGGGCTTACATTTCAAGTGGCCATTAGGGGCCCCTATGCTGGCAGCAATATATGCAATGAGTATGGTTT
TAAAAATGCTGCCTGCCCTGGGTATGGCGTGTCCACCCAAATGCCGCTGCGAGAAGCTGCTCTTCTACTG
CGACTCTCAGGGCTTCCACTCAGTGCCAAACGCCACAGACAAGGGCTCTCTGGGCCTGTCCCTGAGGCAC
AATCACATCACAGAGCTCGAAAGAGATCAATTTGCCAGCTTCAGTCAACTTACTTGGCTCCACTTAGATC
ACAATCAAATTTCAACAGTAAAAGAAGATGCTTTTCAAGGACTATATAAACTTAAGGAATTAATCTTAAG
TTCCAACAAAATATTTTACTTGCCAAACACAACTTTTACCCAACTGATTAACCTGCAAAATTTGGACCTG
TCTTTTAATCAGCTGTCATCTCTGCACCCAGAGCTCTTCTATGGCCTTCGGAAGCTGCAGACCTTGCATT
TACGTTCCAACTCCCTGCGGACTATCCCAGTACGCCTGTTCTGGGACTGTCGTAGTCTGGAGTTTCTGGA
TTTGAGCACAAATCGTTTGCGAAGTTTGGCTCGCAATGGATTTGCAGGATTAATTAAACTGAGAGAGCTT
CACCTAGAGCACAACCAGCTGACGAAGATTAATTTTGCTCATTTCCTACGGCTAAGCAGTCTGCACACGC
TCTTCTTACAATGGAACAAAATCAGCAACTTGACATGTGGGATGGAGTGGACCTGGGGCACTTTAGAAAA
GCTAGACCTGACTGGAAATGAAATCAAAGCCATCGACTTGACAGTGTTTGAAACGATGCCCAATCTTAAA
ATACTCCTCATGGATAACAACAAGTTAAACAGCCTTGATTCCAAGATCTTAAACTCCCTGAGATCCCTCA
CAACCGTTGGTCTCTCTGGCAATCTGTGGGAATGCAGCGCCCGAATATGTGCTCTGGCCTCCTGGCTGGG
CAGTTTCCAAGGTCGGTGGGAACACTCCATCCTATGCCACAGTCCTGACCACACCCAAGGAGAGGATATT
CTAGATGCAGTCCATGGATTTCAGCTCTGCTGGAATTTGTCAACCACTGTCACTGTCATGGCTACAACTT
ATAGAGATCCAACCACTGAATATACAAAAAGAATAAGCTCATCAAGTTACCATGTGGGAGACAAAGAAAT
CCCAACTACTGCAGGCATAGCAGTTACTACCGAGGAACACTTTCCTGAACCAGACAATGCCATCTTCACT
CAGCGGGTAATTACGGGAACAATGGCTTTATTGTTTTCTTTCTTTTTTATTATTTTTATAGTGTTCATCT
CCAGGAAGTGCTGCCCTCCCACTTTAAGAAGAATTAGGCAGTGCTCAATGGTTCAGAACCACAGGCAGCT
CCGATCCCAAACACGACTCCATATGTCAAACATGTCAGACCAAGGACCGTATAATGAATATGAACCCACC
CATGAAGGACCCTTCATCATCATTAATGGTTATGGACAGTGCAAGTGTCAGCAGCTGCCATACAAAGAAT
GTGAAGTATAA

Translation (516 aa):
MGLHFKWPLGAPMLAAIYAMSMVLKMLPALGMACPPKCRCEKLLFYCDSQGFHSVPNATDKGSLGLSLRH
NHITELERDQFASFSQLTWLHLDHNQISTVKEDAFQGLYKLKELILSSNKIFYLPNTTFTQLINLQNLDL
SFNQLSSLHPELFYGLRKLQTLHLRSNSLRTIPVRLFWDCRSLEFLDLSTNRLRSLARNGFAGLIKLREL
HLEHNQLTKINFAHFLRLSSLHTLFLQWNKISNLTCGMEWTWGTLEKLDLTGNEIKAIDLTVFETMPNLK
ILLMDNNKLNSLDSKILNSLRSLTTVGLSGNLWECSARICALASWLGSFQGRWEHSILCHSPDHTQGEDI
LDAVHGFQLCWNLSTTVTVMATTYRDPTTEYTKRISSSSYHVGDKEIPTTAGIAVTTEEHFPEPDNAIFT
QRVITGTMALLFSFFFIIFIVFISRKCCPPTLRRIRQCSMVQNHRQLRSQTRLHMSNMSDQGPYNEYEPT
HEGPFIIINGYGQCKCQQLPYKECEV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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