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Report for CCDS33527.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33527.3 Public Homo sapiens 21 LTN1 24 110 108 CCDS HistoryNCBI Gene:26046Re-query CCDS DB by CCDS ID:33527.3See the combined annotation on chromosome 21 in Sequence Viewer

Public Note for CCDS 33527.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33527.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361371.10 ENSP00000354977.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361371.10Link to Ensembl Protein Viewer:ENSP00000354977.4Re-query CCDS DB by Nucleotide ID:ENST00000361371Re-query CCDS DB by Protein ID:ENSP00000354977
Original member Current member EBI ENST00000389194.7 ENSP00000373846.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000389194.7Link to Ensembl Protein Viewer:ENSP00000373846.3Re-query CCDS DB by Nucleotide ID:ENST00000389194Re-query CCDS DB by Protein ID:ENSP00000373846
Original member Current member NCBI NM_015565.3 NP_056380.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015565.3Link to Protein Sequence:NP_056380.3Re-query CCDS DB by Nucleotide ID:NM_015565Re-query CCDS DB by Protein ID:NP_056380Link to BLAST:NP_056380.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056380.3 1766 O94822-1 1766 100% 0 0

Chromosomal Locations for CCDS 33527.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 28930448 28930510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28931155 28931322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28932470 28932664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28935109 28935329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28936526 28936697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28941220 28941406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28943262 28943336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28943667 28943904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28944383 28944596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28945807 28945951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28946152 28946287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28947464 28947606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28952160 28952264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28953217 28953376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28956762 28956948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28957332 28957476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28958386 28958539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28959458 28959697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28960517 28960706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28965865 28965906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28966370 28967179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28969466 28969601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28970552 28970742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28971271 28971444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28981119 28981299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28982316 28982368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28984692 28984922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28986139 28986237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28986731 28986934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 28992764 28992805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5301 nt):
ATGGGCGGGAAGAACAAGCAGCGAACTAAAGGGAACCTGAGGCCTTCAAACAGTGGCCGAGCTGCAGAAC
TC
CTTGCCAAAGAACAGGGAACAGTGCCTGGATTTATTGGTTTTGGAACATCTCAGAGTGACCTAGGCTA
T
GTTCCTGCTATTCAAGGAGCTGAAGAAATTGACAGTCTTGTAGATTCTGATTTCCGAATGGTGCTGCGG
AAA
CTTTCAAAGAAAGATGTCACCACAAAATTAAAAGCTATGCAGGAATTTGGAACCATGTGTACAGAGA
GA
GACACAGAAACTGTGAAAGGAGTTCTTCCATATTGGCCAAGAATTTTTTGCAAAATTTCACTTGATCA
T
GACCGTCGCGTCCGAGAAGCCACACAACAAGCTTTTGAAAAACTTATCCTTAAAGTAAAGAAACAGTTG
GCT
CCCTACTTAAAAAGTTTAATGGGATATTGGCTAATGGCTCAGTGTGATACTTACACACCAGCTGCGT
TT
GCAGCAAAAGATGCATTTGAAGCGGCTTTTCCTCCAAGCAAGCAACCTGAAGCCATAGCATTTTGTAA
G
GATGAAATTACAAGTGTGCTGCAGGATCATCTTATAAAAGAAACACCTGATACACTCAGTGACCCGCAA
ACT
GTTCCAGAGGAAGAAAGAGAAGCTAAATTCTACCGGGTTGTAACTTGTTCCTTATTGGCATTAAAGA
GA
TTACTTTGCCTTTTACCTGATAATGAGCTTGATTCTCTGGAGGAGAAATTTAAGTCTCTTTTATCACA
G
AATAAGTTTTGGAAGTATGGAAAACACAGTGTACCTCAGATTCGCTCAGCTTATTTTGAGTTAGTCTCT
GCA
TTGTGCCAGCGCATTCCACAGTTGATGAAAGAGGAAGCATCCAAAGTGAGCCCATCAGTTCTACTTA
GC
ATTGATGACAGTGACCCAATTGTCTGCCCAGCTCTCTGGGAAGCTGTACTCTATACACTTACAACTAT
T
GAGGACTGTTGGCTTCATGTAAATGCAAAAAAGAGTGTGTTTCCCAAGCTATCAACTGTGATTCGTGAA
GGT
GGTCGGGGTCTAGCTACTGTCATATATCCTTACCTTCTGCCATTCATCAGCAAGCTCCCTCAGTCCA
TC
ACAAATCCAAAGTTGGATTTCTTCAAAAATTTCCTCACGTCTCTAGTTGCTGGGCTGTCAACAGAGAG
A
ACTAAAACCAGCTCTTTAGAGTCCTCGGCAGTAATATCTGCTTTTTTTGAATGCTTACGTTTTATAATG
CAG
CAAAACTTAGGTGAGGAAGAGATTGAACAGATGCTCGTCAATGATCAGTTGATCCCTTTTATTGATG
CA
GTTCTCAAAGACCCAGGATTGCAACATGGGCAGCTATTTAACCATTTAGCAGAAACTCTAAGTTCCTG
G
GAAGCCAAAGCAGACACGGAAAAAGATGAAAAAACAGCTCACAACTTGGAGAACGTACTGATACATTTC
TGG
GAAAGACTGTCAGAGATCTGTGTTGCGAAAATCAGTGAGCCAGAAGCTGATGTTGAGTCCGTTTTGG
GT
GTATCTAACCTATTACAGGTGCTTCAGAAGCCGAAGAGCTCATTGAAGTCAAGTAAAAAAAAAAATGG
T
AAGGTTAGATTTGCTGATGAGATACTTGAAAGCAATAAAGAGAATGAAAAATGTGTATCTTCAGAAGGA
GAG
AAGATTGAAGGCTGGGAATTAACAACTGAACCTTCTCTCACTCATAATTCTTCAGGCCTTTTGTCTC
CT
CTAAGGAAAAAACCTTTGGAAGACTTAGTCTGTAAACTCGCAGATATAAGTATTAATTATGTCAATGA
A
CGAAAGTCAGAGCAACATCTAAGGTTTCTTTCTACTCTGCTTGACTCCTTTTCTTCAAGCCGAGTATTT
AAA
ATGCTACTTGGTGATGAAAAACAGAGTATTGTCCAAGCCAAACCTCTTGAAATAGCCAAGCTTGTAC
AA
AAAAATCCTGCGGTGCAGTTTTTATACCAGAAACTGATAGGTTGGCTAAATGAAGATCAAAGGAAGGA
T
TTTGGTTTCCTGGTGGACATTTTGTACAGTGCTCTCCGGTGCTGTGACAATGATATGGAAAGAAAAAAA
GTC
TTGGATGATCTAACCAAGGTGGACTTGAAATGGAATTCTCTTCTTAAGATTATTGAAAAGGCATGTC
CT
AGTTCAGATAAACATGCTTTAGTAACTCCTTGGCTCAAAGGCGATATCCTTGGTGAGAAATTGGTCAA
C
TTGGCAGATTGTCTTTGTAATGAGGACTTGGAATCCAGGGTATCTTCAGAATCTCACTTCTCAGAAAGA
TGG
ACTCTTCTAAGCTTGGTATTATCCCAACATGTTAAAAATGATTACTTGATTGGAGACGTATATGTTG
AA
AGAATCATTGTTAGACTTCATGAAACTTTATTCAAAACAAAGAAATTATCAGAAGCTGAAAGCAGTGA
C
TCATCAGTGTCTTTTATCTGTGATGTGGCCTATAACTATTTCAGCTCAGCGAAAGGATGCTTGCTAATG
CCA
TCATCTGAAGATTTATTATTAACTCTCTTTCAGTTATGTGCTCAGAGCAAAGAAAAAACACATTTGC
CA
GATTTTCTTATCTGTAAACTGAAAAATACTTGGCTCTCTGGTGTAAATTTATTGGTTCATCAAACTGA
C
AGTTCATATAAAGAGAGTACCTTCCTACATTTGTCTGCTCTGTGGCTGAAGAACCAAGTTCAGGCTTCA
TCT
TTGGATATCAACAGTCTCCAAGTCCTCTTGTCTGCTGTTGATGATTTGCTAAATACACTTCTAGAGA
GT
GAAGATTCTTATCTTATGGGAGTTTATATTGGAAGTGTAATGCCGAACGACAGTGAATGGGAAAAGAT
G
AGGCAGTCTCTTCCTATGCAGTGGTTACATAGACCTCTTTTAGAGGGAAGATTGAGTTTGAATTATGAA
TGT
TTCAAAACAGATTTTAAGGAACAGGACATAAAGACACTTCCCAGCCATTTGTGTACTTCAGCATTAT
TG
AGCAAAATGGTCTTAATTGCACTGAGAAAGGAAACAGTCTTAGAAAATAATGAGCTTGAGAAAATAAT
T
GCAGAACTGCTTTATTCACTGCAGTGGTGTGAAGAATTAGATAACCCACCTATTTTTCTAATTGGATTT
TGT
GAAATACTTCAAAAAATGAATATTACGTATGATAACTTACGTGTACTTGGTAATACGTCGGGCCTTT
TG
CAGCTGTTATTTAACAGGTCCAGAGAACATGGCACACTGTGGTCTCTTATTATTGCTAAGTTGATCCT
T
TCCCGAAGCATTTCATCTGATGAAGTAAAACCACATTATAAGAGAAAAGAAAGTTTTTTTCCACTAACT
GAA
GGCAATTTGCATACCATTCAAAGTCTATGTCCATTTTTGTCAAAAGAAGAAAAGAAAGAATTTAGTG
CT
CAATGTATACCTGCTCTTTTGGGCTGGACTAAGAAAGATCTTTGCAGCACTAATGGAGGTTTTGGACA
T
CTTGCCATTTTCAATTCTTGTCTGCAAACCAAAAGTATAGATGATGGAGAGCTATTACATGGAATATTA
AAA
ATCATAATATCCTGGAAGAAAGAGCATGAAGATATTTTTCTTTTCAGTTGTAATCTATCAGAAGCAA
GT
CCAGAGGTACTGGGTGTAAATATAGAAATAATCCGGTTTCTTTCCCTATTTCTGAAATACTGCTCATC
C
CCTTTGGCAGAGAGTGAGTGGGACTTCATCATGTGCTCCATGTTGGCTTGGTTGGAGACAACAAGTGAG
AAT
CAGGCATTGTATTCTATTCCACTTGTGCAACTGTTTGCCTGTGTCAGCTGTGATTTGGCCTGTGACC
TC
AGTGCTTTCTTTGATTCCACAACTCTGGATACCATTGGCAATCTTCCTGTAAATCTAATCAGTGAATG
G
AAAGAATTTTTTTCCCAAGGCATCCACAGTTTGCTTTTACCTATTTTGGTGACTGTTACAGGAGAAAAC
AAA
GATGTGTCTGAAACATCCTTTCAGAATGCAATGCTGAAACCCATGTGTGAAACATTAACGTATATCT
CA
AAGGAACAGCTATTGAGTCACAAACTTCCTGCAAGATTAGTTGCTGACCAAAAAACAAACTTACCAGA
A
TATCTCCAGACTTTGTTAAATACATTGGCCCCATTACTCCTCTTCAGAGCTAGGCCTGTGCAAATTGCT
GTT
TATCATATGCTATACAAATTGATGCCTGAATTACCACAGTATGATCAGGATAATCTAAAGTCATACG
GA
GATGAAGAAGAAGAGCCAGCCTTGTCACCACCAGCAGCACTGATGTCTCTTCTTAGCATTCAAGAGGA
C
TTACTAGAAAATGTTTTGGGGTGTATTCCTGTTGGACAGATAGTTACTATTAAACCACTGAGTGAAGAC
TTC
TGTTATGTTCTGGGATACCTTCTCACTTGGAAATTAATACTAACTTTCTTCAAAGCTGCATCATCAC
AG
CTTCGGGCTTTGTATTCCATGTATCTTCGGAAAACAAAGAGTTTGAATAAATTGCTCTATCACCTGTT
C
AGGCTTATGCCAGAAAATCCAACCTATGCAGAGACAGCAGTTGAGGTCCCAAATAAGGACCCTAAAACA
TTC
TTTACTGAGGAGCTCCAGCTGAGTATTAGAGAAACAACAATGCTTCCATACCACATTCCACACTTGG
CT
TGTTCAGTCTATCATATGACATTAAAAGACTTGCCTGCCATGGTTAGGTTGTGGTGGAATAGCAGTGA
G
AAGCGTGTTTTCAATATTGTGGATAGATTTACAAGCAAGTATGTCAGCAGTGTTCTTTCTTTTCAAGAA
ATA
TCTTCTGTACAAACAAGTACACAACTATTTAATGGCATGACGGTTAAAGCTCGAGCTACTACTCGAG
AG
GTAATGGCTACTTATACTATTGAGGACATAGTTATTGAACTTATAATACAACTGCCTTCAAATTATCC
A
CTGGGTTCAATAATAGTAGAAAGTGGGAAAAGAGTAGGAGTAGCTGTTCAGCAGTGGCGGAACTGGATG
CTG
CAGTTAAGCACTTACCTCACCCATCAGAATGGAAGTATTATGGAAGGCTTAGCTTTATGGAAAAATA
AC
GTAGACAAACGTTTTGAGGGTGTTGAAGATTGCATGATCTGTTTCTCAGTCATTCACGGTTTCAACTA
T
TCCCTTCCCAAAAAAGCCTGTAGAACATGCAAGAAAAAATTCCATTCAGCCTGCTTGTACAAATGGTTT
ACA
TCTAGCAACAAATCCACTTGTCCACTGTGTCGTGAGACGTTTTTCTGA


Translation (1766 aa):
MGGKNKQRTKGNLRPSNSGRAAELLAKEQGTVPGFIGFGTSQSDLGYVPAIQGAEEIDSLVDSDFRMVLR
K
LSKKDVTTKLK
AMQEFGTMCTERDTETVKGVLPYWPRIFCKISLDHDRRVREATQQAFEKLILKVKKQL
A
PYLKSLMGYWLMAQCDTYTPAAFAAKDAFEAAFPPSKQPEAIAFCKDEITS
VLQDHLIKETPDTLSDPQ
T
VPEEEREAKFYRVVTCSLLALKRLLCLLPDNELDSLEEKFKSLLSQNKFWKYGKHSVPQ
IRSAYFELVS
A
LCQRIPQLMKEEASKVSPSVLLSIDDSDPIVCPALWEAVLYTLTTIE
DCWLHVNAKKSVFPKLSTVIRE
G
GRGLATVIYPYLLPFISKLPQSITNPKLDFFKNFLTSLVA
GLSTERTKTSSLESSAVISAFFECLRFIM
Q
QNLGEEEIEQMLVNDQ
LIPFIDAVLKDPGLQHGQLFNHLAETLSSWEAKADTEKDEKTAHNLENVLIHF
W
ERLSEICVAKISEPEADVESVLGVSNLLQVLQKPKSSLKSSKKKNGKVRFADEILESNKENEKCVSSEG
E
KIEGWELTTEPSLTHNSSGLLSPLRKKPLEDLVCKLADISINYVNERKSEQHLRFLSTLLDSFSSSRVF
K
MLLGDEKQSIVQAKPLEIAKLVQKNPAVQFLYQKLIGWLNEDQRKDFGFLVDILYSALRCCDNDMERKK
V
LDDLTK
VDLKWNSLLKIIEKACPSSDKHALVTPWLKGDILGEKLVNLADCLCNEDLESRVSSESHFSER
W
TLLSLVLSQHVKN
DYLIGDVYVERIIVRLHETLFKTKKLSEAESSDSSVSFICDVAYNYFSSAKGCLLM
P
SSEDLLLTLFQLCAQSKEKTHLP
DFLICKLKNTWLSGVNLLVHQTDSSYKESTFLHLSALWLKNQVQAS
S
LDIN
SLQVLLSAVDDLLNTLLESEDSYLMGVYIGSVMPNDSEWEKMRQSLPMQWLHRPLLEGRLSLNYE
C
FKTDFKEQDIKTLPSHLCTSALLSKMVLIALRKETVLENNELEKI
IAELLYSLQWCEELDNPPIFLIGF
C
EILQKMNITYDNLRVLGNTSGLLQLLFN
RSREHGTLWSLIIAKLILSRSISSDEVKPHYKRKESFFPLT
E
GNLHTIQSLCPFLSKEEKKEFSAQCIPALLGWTKKDLCSTN
GGFGHLAIFNSCLQTKSIDDGELLHGIL
K
IIISWKKEHEDIFLFS
CNLSEASPEVLGVNIEIIRFLSLFLKYCSSPLAESEWDFIMCSMLAWLETTSE
N
QALYSIPLVQLFACVSCDLACDLSAFFDSTTLDTIGNLPVNLISEWKEFFSQGIHSLLLPILVTVT
GEN
K
DVSETSFQNAMLKPMCETLTYISKEQLLSHKLPARLVADQKTNLPEYLQTLLNTLAPLLLFRARPVQIA
V
YHMLY
KLMPELPQYDQDNLKSYGDEEEEPALSPPAALMSLLSIQEDLLENVLGCIPVGQIVTIKPLSED
F
CYVLGYLLTWKLILTFFKAASSQ
LRALYSMYLRKTKSLNKLLYHLFRLMPENPTYAETAVEVPNKDPKT
F
FTEELQLSIR
ETTMLPYHIPHLACSVYHMTLKDLPAMVRLWWNSSEKRVFNIVDRFTSKYVSSVLSFQE
I
SSVQTSTQLFNGMT
VKARATTREVMATYTIEDIVIELIIQLPSNYPLGSIIVESGKRVGVAVQQWRNWM
L
QLSTYLTHQ
NGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWF
T
SSNKSTCPLCRETFF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser