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Report for CCDS11260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11260.1 Public Homo sapiens 17 ATAD5 24 110 108 CCDS HistoryNCBI Gene:79915Re-query CCDS DB by CCDS ID:11260.1Re-query CCDS DB by GeneID:79915See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11260.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321990.5 ENSP00000313171.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321990.5Link to Ensembl Protein Viewer:ENSP00000313171.4Re-query CCDS DB by Nucleotide ID:ENST00000321990Re-query CCDS DB by Protein ID:ENSP00000313171
Original member Current member NCBI NM_024857.5 NP_079133.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024857.5Link to Protein Sequence:NP_079133.3Re-query CCDS DB by Nucleotide ID:NM_024857Re-query CCDS DB by Protein ID:NP_079133Link to BLAST:NP_079133.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079133.3 1844 Q96QE3-1 1844 100% 0 0

Chromosomal Locations for CCDS 11260.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 30832348 30832413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30834148 30836048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30837206 30837314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30840617 30840781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30843913 30844039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30844835 30844916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30855143 30855327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30856955 30857112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30858161 30858323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30860433 30860612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30865704 30865800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30868333 30868412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30869248 30869390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30869496 30869646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30876374 30876550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30877416 30877549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30878003 30878096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30879423 30879487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30887192 30887372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30892607 30892788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30893294 30894150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30894564 30894722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30894835 30894913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5535 nt):
ATGGTGGGGGTCCTGGCCATGGCGGCTGCAGCTGCTCCGCCTCCCGTGAAGGACTGCGAGATTGAGCCAT
GCAAAAAGCGAAAGAAAGATGATGACACATCTACCTGCAAAACAATTACAAAATATTTATCACCACTAGG
GAAGACTAGAGACAGGGTTTTTGCTCCACCAAAACCTAGTAATATTCTGGATTATTTTAGAAAGACTTCA
CCCACAAATGAGAAGACACAATTAGGGAAAGAGTGCAAGATAAAGTCACCTGAATCAGTACCTGTTGACA
GCAACAAAGACTGTACGACACCTTTGGAAATGTTCTCAAATGTAGAGTTTAAGAAGAAAAGAAAGAGGGT
TAATTTATCTCATCAACTAAATAATATTAAAACTGAAAATGAAGCTCCAATTGAAATTAGTAGCGACGAT
AGCAAAGAAGACTATAGTTTAAATAATGATTTTGTGGAAAGTAGTACTTCTGTTTTACGTTACAAGAAAC
AAGTAGAGGTACTTGCAGAAAACATTCAAGATACAAAAAGTCAACCAAATACTATGACCTCCCTGCAAAA
TTCTAAAAAAGTAAATCCTAAACAAGGGACCACAAAAAATGACTTCAAAAAGTTGAGAAAAAGGAAATGC
AGAGATGTAGTAGATCTATCTGAAAGCTTACCCTTGGCAGAGGAACTAAATTTGCTTAAAAAAGATGGTA
AAGATACTAAACAGATGGAGAATACTACAAGCCATGCAAACTCTAGAGATAACGTAACTGAAGCAGCCCA
GTTAAATGATAGTATAATAACTGTCTCATATGAGGAATTTTTAAAAAGTCACAAGGAAAATAAAGTGGAA
GAGATACCAGACTCTACAATGTCAATTTGTGTTCCTTCTGAAACTGTCGACGAAATAGTCAAAAGTGGTT
ATATAAGTGAATCAGAAAACTCCGAAATTTCCCAGCAGGTACGCTTTAAGACAGTTACTGTTCTTGCACA
GGTTCACCCTATTCCGCCCAAAAAGACAGGGAAAATACCCCGAATTTTCTTGAAACAAAAGCAATTTGAA
ATGGAAAATAGTTTATCTGATCCTGAGAATGAACAGACAGTTCAGAAAAGAAAATCTAATGTTGTTATAC
AGGAGGAAGAATTAGAATTGGCTGTTTTGGAAGCTGGAAGTTCTGAAGCTGTGAAACCAAAATGCACTCT
AGAAGAAAGACAGCAATTTATGAAAGCATTTAGGCAGCCAGCATCAGATGCACTTAAAAATGGAGTTAAA
AAGTCTTCTGATAAGCAGAAAGACCTTAATGAAAAATGTCTATATGAAGTAGGAAGAGATGATAATTCTA
AAAAAATCATGGAAAATTCTGGTATCCAAATGGTTTCAAAAAATGGCAATTTACAGTTACACACTGATAA
AGGAAGTTTTCTGAAGGAGAAAAATAAAAAGCTAAAGAAGAAGAATAAGAAAACATTAGATACTGGGGCT
ATTCCAGGCAAAAACAGAGAGGGAAACACTCAAAAGAAAGAAACAACCTTTTTCTTAAAAGAGAAACAAT
ATCAAAATAGAATGAGTTTAAGACAAAGGAAAACAGAGTTTTTCAAAAGCAGCACTTTATTTAACAATGA
AAGTCTTGTTTATGAAGATATAGCAAATGATGACCTTCTAAAGGTTTCCTCTCTGTGTAACAATAATAAA
TTGTCAAGAAAAACCAGCATACCAGTTAAAGATATTAAGCTTACACAGTCTAAAGCTGAATCTGAAGCCA
GCTTGCTAAATGTTTCCACGCCCAAGTCAACTAGAAGATCTGGAAGAATTAGCAGCACACCTACTACAGA
AACCATTAGAGGTATTGATTCTGACGATGTACAAGATAATAGTCAACTAAAGGCTTCCACTCAAAAAGCA
GCCAACTTATCGGAAAAGCACAGCTTATATACAGCAGAATTAATAACAGTACCCTTTGATTCAGAGAGCC
CTATTAGAATGAAATTCACCAGAATTAGTACTCCCAAAAAATCTAAGAAAAAATCTAACAAAAGATCTGA
GAAATCTGAAGCAACTGATGGAGGTTTTACTTCTCAGATTAGAAAGGCAAGCAATACTTCAAAAAACATA
TCAAAAGCAAAACAATTGATTGAAAAAGCAAAAGCTTTACACATCAGTAGGTCAAAGGTGACTGAAGAAA
TAGCGATACCCTTAAGGCGCTCCTCTAGACATCAGACACTTCCTGAAAGGAAGAAATTGTCAGAAACAGA
AGATTCTGTTATAATAATAGATTCAAGTCCTACTGCTTTAAAGCATCCAGAGAAAAATCAGAAGAAACTT
CAGTGTTTGAATGATGTGCTAGGAAAAAAACTTAACACATCCACTAAAAATGTACCTGGAAAAATGAAAG
TCGCTCCTTTATTTCTTGTCAGAAAAGCACAAAAAGCAGCTGATCCTGTCCCTAGTTTTGATGAAAGCAG
TCAAGATACATCTGAAAAATCTCAGGATTGTGATGTTCAATGTAAAGCAAAGCGTGACTTCCTAATGAGT
GGTTTGCCAGATTTGTTGAAACGGCAAATTGCAAAGAAAGCTGCTGCGCTGGATGTGTACAATGCAGTGA
GTACCAGTTTCCAGAGAGTCGTACATGTGCAACAAAAGGATGATGGGTGTTGTTTGTGGCATTTGAAACC
ACCCTCTTGTCCTCTCTTAACTAAATTTAAAGAACTGAACACTAAAGTAATAGATCTCTCAAAATGTGGT
ATTGCTCTTGGTGAATTTTCAACATTGAATTCAAAGTTGAAAAGCGGTAACTCTGCTGCTGTGTTCATGA
GGACAAGGAAGGAATTTACTGAAGAAGTAAGAAATCTTTTGCTTGAGGAAATTAGGTGGTCAAATCCTGA
ATTTTCATTGAAAAAATATTTTCCCTTACTCCTAAAAAAACAAATTGAGCACCAAGTACTTTCTTCCGAG
TGTCATAGTAAACAAGAACTGGAGGCTGATGTCAGCCATAAAGAAACCAAAAGGAAACTCGTAGAAGCAG
AAAATTCTAAGTCAAAAAGAAAGAAACCAAATGAGTATTCAAAAAATCTGGAGAAGACCAATAGGAAGTC
AGAAGAACTTAGCAAAAGAAACAACTCTTCTGGGATAAAGCTAGATTCTTCCAAAGATTCTGGAACTGAA
GACATGCTTTGGACAGAAAAGTATCAACCTCAGACTGCCAGTGAACTTATAGGAAATGAGTTAGCTATAA
AAAAGTTACATAGTTGGTTGAAAGACTGGAAAAGAAGAGCTGAATTGGAAGAAAGGCAGAATCTGAAGGG
AAAAAGAGATGAGAAACATGAAGATTTCTCGGGTGGCATAGACTTTAAAGGCAGTTCAGATGATGAAGAA
GAGAGTCGTCTTTGCAATACTGTCCTTATAACAGGGCCAACAGGAGTGGGAAAAACTGCTGCAGTGTATG
CTTGTGCCCAGGAGCTTGGATTTAAGATATTTGAAGTGAATGCCTCTTCCCAGCGCAGTGGTAGACAAAT
TCTATCTCAGTTGAAGGAAGCTACTCAGTCCCATCAAGTAGACAAACAAGGTGTAAACTCACAAAAACCC
TGTTTTTTTAATAGCTACTACATAGGCAAGTCACCAAAAAAAATAAGCTCCCCTAAGAAAGTTGTTACAT
CACCAAGAAAAGTTCCTCCACCATCACCAAAAAGTAGTGGACCAAAGCGAGCACTTCCTCCCAAAACCTT
GGCAAATTATTTTAAAGTATCTCCCAAACCTAAAAATAATGAAGAAATAGGAATGCTTCTGGAAAATAAT
AAAGGAATAAAAAATTCTTTTGAACAGAAACAAATTACTCAGACTAAATCTACAAATGCAACTAATTCAA
ATGTCAAAGACGTTGGAGCTGAAGAACCCAGCAGAAAAAATGCAACATCTCTTATTCTTTTTGAGGAGGT
TGATGTAATTTTTGATGAAGATGCTGGGTTTTTGAATGCAATCAAAACATTCATGGCAACAACTAAACGA
CCTGTAATCCTTACTACAAGTGACCCAACATTTAGTTTAATGTTTGATGGCTGCTTTGAAGAAATCAAGT
TCAGTACTCCTTCCCTGCTAAATGTTGCCAGCTACCTACAAATGATTTGCTTAACTGAGAATTTTAGAAC
TGATGTAAAAGACTTTGTAACCTTGTTAACTGCAAATACTTGTGATATCAGAAAAAGTATCCTTTACTTA
CAATTCTGGATTAGAAGTGGAGGTGGAGTTTTAGAAGAACGACCATTAACCCTTTATCGTGGAAATAGCA
GAAATGTACAACTAGTTTGCTCTGAACATGGCCTTGATAACAAAATTTACCCTAAAAATACTAAAAAGAA
ACGTGTAGACCTTCCAAAATGTGACAGTGGCTGTGCTGAGACCTTGTTTGGCCTTAAGAACATTTTTTCC
CCATCTGAAGACTTATTTTCATTTTTAAAGCACAAAATCACAATGAAGGAAGAATGGCATAAATTCATCC
AGCTTCTTACAGAATTCCAAATGCGGAATGTAGATTTTTTATATAGTAATCTTGAGTTTATTCTACCATT
ACCAGTTGATACCATTCCAGAAACTAAAAACTTTTGTGGCCCATCAGTAACTGTGGATGCCAGTGCAGCA
ACAAAAAGTATGAATTGTCTTGCTAGGAAACACTCTGAAAGAGAACAGCCATTGAAAAAGTCCCAGAAAA
AGAAACAAAAGAAAACATTGGTAATATTAGATGATAGTGATCTATTTGACACTGACTTGGACTTTCCTGA
TCAATCTATTAGCCTGTCCTCTGTATCATCTTCCTCAAATGCAGAAGAAAGCAAAACCGGAGACGAAGAA
AGCAAAGCCAGAGACAAAGGAAACAATCCAGAGACAAAGAAATCTATTCCTTGTCCTCCTAAAACAACTG
CAGGAAAAAAATGTTCTGCCCTTGTTTCTCATTGTTTAAATTCTCTCTCTGAGTTCATGGATAACATGTC
CTTCTTAGATGCACTTTTAACTGATGTAAGGGAACAAAACAAATACGGTAGAAATGACTTTAGTTGGACA
AATGGAAAGGTTACAAGTGGACTTTGTGATGAGTTTAGTCTTGAGAGTAATGATGGATGGACTTCTCAAA
GCTCTGGAGAATTAAAGGCAGCTGCAGAAGCTCTCAGCTTTACTAAATGTTCTTCTGCTATTTCAAAAGC
ATTGGAAACCTTGAATTCTTGCAAGAAATTAGGAAGAGATCCAACCAACGATCTTACTTTTTATGTTTCA
CAAAAGCGCAATAATGTATACTTTAGTCAGTCAGCAGCTAATTTAGACAATGCTTGGAAGAGGATATCAG
TCATTAAAAGTGTATTTTCGAGTCGATCTCTTCTCTATGTGGGTAATAGACAAGCTAGTATAATTGAATA
CCTGCCAACCCTTCGAAACATCTGTAAGACTGAGAAGCTAAAAGAACAAGGAAAAAGTAAAAGAAGATTC
CTGCACTATTTTGAAGGAATTCATCTTGACATTCCAAAAGAGACTGTGAATACTTTGGCAGCTGACTTCC
CTTAA

Translation (1844 aa):
MVGVLAMAAAAAPPPVKDCEIEPCKKRKKDDDTSTCKTITKYLSPLGKTRDRVFAPPKPSNILDYFRKTS
PTNEKTQLGKECKIKSPESVPVDSNKDCTTPLEMFSNVEFKKKRKRVNLSHQLNNIKTENEAPIEISSDD
SKEDYSLNNDFVESSTSVLRYKKQVEVLAENIQDTKSQPNTMTSLQNSKKVNPKQGTTKNDFKKLRKRKC
RDVVDLSESLPLAEELNLLKKDGKDTKQMENTTSHANSRDNVTEAAQLNDSIITVSYEEFLKSHKENKVE
EIPDSTMSICVPSETVDEIVKSGYISESENSEISQQVRFKTVTVLAQVHPIPPKKTGKIPRIFLKQKQFE
MENSLSDPENEQTVQKRKSNVVIQEEELELAVLEAGSSEAVKPKCTLEERQQFMKAFRQPASDALKNGVK
KSSDKQKDLNEKCLYEVGRDDNSKKIMENSGIQMVSKNGNLQLHTDKGSFLKEKNKKLKKKNKKTLDTGA
IPGKNREGNTQKKETTFFLKEKQYQNRMSLRQRKTEFFKSSTLFNNESLVYEDIANDDLLKVSSLCNNNK
LSRKTSIPVKDIKLTQSKAESEASLLNVSTPKSTRRSGRISSTPTTETIRGIDSDDVQDNSQLKASTQKA
ANLSEKHSLYTAELITVPFDSESPIRMKFTRISTPKKSKKKSNKRSEKSEATDGGFTSQIRKASNTSKNI
SKAKQLIEKAKALHISRSKVTEEIAIPLRRSSRHQTLPERKKLSETEDSVIIIDSSPTALKHPEKNQKKL
QCLNDVLGKKLNTSTKNVPGKMKVAPLFLVRKAQKAADPVPSFDESSQDTSEKSQDCDVQCKAKRDFLMS
GLPDLLKRQIAKKAAALDVYNAVSTSFQRVVHVQQKDDGCCLWHLKPPSCPLLTKFKELNTKVIDLSKCG
IALGEFSTLNSKLKSGNSAAVFMRTRKEFTEEVRNLLLEEIRWSNPEFSLKKYFPLLLKKQIEHQVLSSE
CHSKQELEADVSHKETKRKLVEAENSKSKRKKPNEYSKNLEKTNRKSEELSKRNNSSGIKLDSSKDSGTE
DMLWTEKYQPQTASELIGNELAIKKLHSWLKDWKRRAELEERQNLKGKRDEKHEDFSGGIDFKGSSDDEE
ESRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKP
CFFNSYYIGKSPKKISSPKKVVTSPRKVPPPSPKSSGPKRALPPKTLANYFKVSPKPKNNEEIGMLLENN
KGIKNSFEQKQITQTKSTNATNSNVKDVGAEEPSRKNATSLILFEEVDVIFDEDAGFLNAIKTFMATTKR
PVILTTSDPTFSLMFDGCFEEIKFSTPSLLNVASYLQMICLTENFRTDVKDFVTLLTANTCDIRKSILYL
QFWIRSGGGVLEERPLTLYRGNSRNVQLVCSEHGLDNKIYPKNTKKKRVDLPKCDSGCAETLFGLKNIFS
PSEDLFSFLKHKITMKEEWHKFIQLLTEFQMRNVDFLYSNLEFILPLPVDTIPETKNFCGPSVTVDASAA
TKSMNCLARKHSEREQPLKKSQKKKQKKTLVILDDSDLFDTDLDFPDQSISLSSVSSSSNAEESKTGDEE
SKARDKGNNPETKKSIPCPPKTTAGKKCSALVSHCLNSLSEFMDNMSFLDALLTDVREQNKYGRNDFSWT
NGKVTSGLCDEFSLESNDGWTSQSSGELKAAAEALSFTKCSSAISKALETLNSCKKLGRDPTNDLTFYVS
QKRNNVYFSQSAANLDNAWKRISVIKSVFSSRSLLYVGNRQASIIEYLPTLRNICKTEKLKEQGKSKRRF
LHYFEGIHLDIPKETVNTLAADFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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