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Report for CCDS55159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55159.1 Public Homo sapiens 7 RBM28 24 110 108 CCDS HistoryNCBI Gene:55131Re-query CCDS DB by CCDS ID:55159.1Re-query CCDS DB by GeneID:55131See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55159.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415472.6 ENSP00000390517.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415472.6Link to Ensembl Protein Viewer:ENSP00000390517.2Re-query CCDS DB by Nucleotide ID:ENST00000415472Re-query CCDS DB by Protein ID:ENSP00000390517
Original member Current member NCBI NM_001166135.2 NP_001159607.1 Accepted alive Link to Nucleotide Sequence:NM_001166135.2Link to Protein Sequence:NP_001159607.1Re-query CCDS DB by Nucleotide ID:NM_001166135Re-query CCDS DB by Protein ID:NP_001159607Link to BLAST:NP_001159607.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159607.1 618 Q9NW13-2 618 100% 0 0

Chromosomal Locations for CCDS 55159.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 128310797 128310931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128313175 128313274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128314764 128315020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128317659 128317733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128317957 128318106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128321266 128321424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128323527 128323591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128324559 128324694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128325818 128325891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128330819 128330928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128333290 128333362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128335543 128335679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128335847 128336042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128337131 128337202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128343676 128343793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGGCCGGCCTGACCTTATTTGTGGGCCGCCTCCCGCCCTCGGCCCGCAGTGAGCAGCTGGAGGAACTGT
TCAGTCAGGTGGGGCCGGTGAAGCAGTGCTTCGTGGTGACTGAAAAAGGCCGGACAGTGGCTGTGGATTG
GGCCGTGGCAAAGGATAAATATAAAGATACACAGTCTGTTTCTGCTATAGGTGAGGAAAAGAGCCATGAA
TCTAAACATCAGGAATCAGTTAAAAAGAAGGGCAGAGAGGAAGAGGATATGGAAGAGGAAGAAAACGATG
ATGATGACGATGATGATGATGAAGAAGATGGGGTTTTTGATGATGAAGATGAAGAGGAAGAGAATATAGA
ATCAAAGGTGACCAAGCCTGTGCAAATTCAGAAGAGAGCAGTCAAGAGACCAGCCCCTGCAAAAAGCAGT
GATCATTCTGAGGAGGACAGTGACCTAGAGGAAAGCGATAGTATTGATGATGGAGAGGAACTGGCTCAGA
GTGATACCAGCACTGAGGAGCAAGAGGATAAAGCTGTGCAAGTCTCAAACAAAAAGAAGAGGAAATTACC
CTCTGATGTGAATGAAGGGAAAACTGTTTTTATCAGAAATCTGTCCTTTGACTCAGAAGAAGAAGAACTT
GGGGAGCTTCTCCAACAGTTTGGAGAACTCAAATATGTCCGCATTGTCTTGCATCCAGACACAGAGCATT
CTAAAGGTTGTGCATTTGCCCAGTTCATGACTCAAGAAGCAGCTCAGAAATGCCTTCTAGCTGCTTCTCC
AGAGAATGAGGCTGGTGGGCTTAAACTGGATGGCCGGCAGCTCAAGGTTGACTTGGCGGTGACCCGTGAT
GAGGCTGCAAAGCTTCAGACGACGAAGGTGAAGAAGCCGACTGGCACCCGGAATCTCTATCTGGCCCGAG
AAGGCTTGATTCGTGCTGGGACGAAGGCTGCAGAGGGTGTGAGTGCTGCTGATATGGCCAAAAGAGAACG
GTTTGAGCTGCTGAAGCATCAGAAACTCAAGGACCAGAATATCTTTGTCTCCCGAACCAGGCTCTGCCTG
CACAATCTCCCAAAGGCTGTAGATGACAAACAGCTCAGAAAGCTGCTGCTGAGTGCTACTAGTGGAGAGA
AAGGGGTGCGCATCAAGGAGTGTAGAGTGATGCGAGACCTCAAAGGAGTTCATGGGAACATGAAGGGTCA
GTCCCTGGGCTACGCCTTTGCGGAGTTCCAAGAGCACGAGCATGCCCTGAAAGCCCTCCGCCTCATCAAC
AACAATCCAGAAATCTTTGGGCCTCTGAAGAGACCAATAGTGGAGTTCTCTTTAGAAGATCGAAGAAAAC
TTAAAATGAAGGAATTAAGGATCCAGCGCAGCTTGCAAAAAATGAGATCCAAGCCTGCAACTGGTGAGCC
TCAGAAGGGGCAACCAGAGCCTGCAAAAGACCAGCAACAGAAGGCAGCTCAACACCACACAGAGGAACAA
AGCAAGGTGCCCCCAGAGCAGAAGAGAAAGGCGGGCTCTACCTCATGGACCGGGTTCCAGACCAAGGCTG
AAGTGGAGCAGGTGGAGCTGCCTGATGGAAAGAAGAGAAGAAAGGTCCTGGCGCTCCCCTCACACCGAGG
CCCCAAAATCAGGTTGCGGGACAAAGGCAAAGTGAAGCCCGTCCATCCCAAAAAGCCAAAGCCACAGATA
AACCAGTGGAAGCAGGAGAAGCAGCAATTATCGTCCGAGCAGGTATCTAGGAAAAAAGCTAAGGGAAATA
AGACGGAAACCCGCTTCAACCAGCTGGTCGAACAATATAAGCAGAAATTATTGGGACCTTCTAAAGGAGC
ACCTCTTGCAAAGAGGAGCAAATGGTTTGATAGTTGA

Translation (618 aa):
MAGLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGRTVAVDWAVAKDKYKDTQSVSAIGEEKSHE
SKHQESVKKKGREEEDMEEEENDDDDDDDDEEDGVFDDEDEEEENIESKVTKPVQIQKRAVKRPAPAKSS
DHSEEDSDLEESDSIDDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVNEGKTVFIRNLSFDSEEEEL
GELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKLDGRQLKVDLAVTRD
EAAKLQTTKVKKPTGTRNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCL
HNLPKAVDDKQLRKLLLSATSGEKGVRIKECRVMRDLKGVHGNMKGQSLGYAFAEFQEHEHALKALRLIN
NNPEIFGPLKRPIVEFSLEDRRKLKMKELRIQRSLQKMRSKPATGEPQKGQPEPAKDQQQKAAQHHTEEQ
SKVPPEQKRKAGSTSWTGFQTKAEVEQVELPDGKKRRKVLALPSHRGPKIRLRDKGKVKPVHPKKPKPQI
NQWKQEKQQLSSEQVSRKKAKGNKTETRFNQLVEQYKQKLLGPSKGAPLAKRSKWFDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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