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Report for CCDS6406.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6406.2 Public Homo sapiens 8 TIGD5 24 110 108 CCDS HistoryNCBI Gene:84948Re-query CCDS DB by CCDS ID:6406.2Re-query CCDS DB by GeneID:84948See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 6406.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6406.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000504548.4 ENSP00000421489.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000504548.4Link to Ensembl Protein Viewer:ENSP00000421489.2Re-query CCDS DB by Nucleotide ID:ENST00000504548Re-query CCDS DB by Protein ID:ENSP00000421489
Original member Current member NCBI NM_032862.5 NP_116251.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032862.5Link to Protein Sequence:NP_116251.4Re-query CCDS DB by Nucleotide ID:NM_032862Re-query CCDS DB by Protein ID:NP_116251Link to BLAST:NP_116251.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116251.4 642 Q53EQ6-1 642 100% 0 0

Chromosomal Locations for CCDS 6406.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 143597904 143599832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGTACCCCGCGGGCCCCCCGGCCGGCCCGGTACCGCGCCGCGGCCGCCGTCCCCTGCCCGGGCCCCCCG
CGCCCGCCCCAGCCCCCGTCCCCGCTGCACGGCCGCCGCCCCCCGCGCCCGGGCCGCGGCCCCGCGTGGC
CGTGAAGATGGCCTTCCGCAAGGCCTACTCCATCAAGGACAAGCTGCAGGCCATCGAGCGCGTCAAGGGC
GGCGAGCGGCAGGCCAGTGTGTGCCGCGACTTCGGCGTGCCGGGCGGGACGCTGCGCGGCTGGCTCAAGG
ACGAGCCCAAGCTGCGCTGGTTCCTGGAGCAGCTGGGCGGTGAGGTGGGCACTCAGCGCAAGAAGATGCG
GCTGGCCAACGAGGAGGAGATCGACCGCGCCGTGTACGCCTGGTTCCTGGCGCTGCGCCAGCACGGGGTG
CCGCTGTCTGGCCCGCTCATCCAGGCGCAGGCCGAGGCCTTCGCGCGCCAGATCTACGGGCCCGAGTGCA
CCTTCAAGGCCAGCCACGGCTGGTTCTGGCGCTGGCAGAAGCGCCACGGCATCTCCAGCCAGCGCTTCTA
CGGCGAGGCCGGGCCCCCAGCCCCGAGCCCCGCGCCCGGCCCGCCCGTCAAGGAGGAGCCCGCGCTGCCC
TCCGGCGCCGGCCCCCTGCCCGACCGCGCCCCGGCCCCGCCGCCCCCGGCCGAGGGCGGCTACGGGGACG
AGCAGATTTACAGCGCCAGCGTCACCGGCCTCTACTGGAAGCTGCTTCCGGAGCAGGCTGCGCCCCCGGG
CGCAGGGGACCCCGGGGCGGGGGGCTGTGGCCGGCGCTGGCGGGGCGACCGCGTAACGGTGCTGCTGGCC
GCAAACCTGACCGGCAGCCACAAGCTGAAGCCGCTGGTCATCGGGCGGCTGCCGGACCCGCCCAGCCTGC
GCCACCACAACCAGGACAAGTTCCCGGCCTCCTACCGCTACAGCCCCGACGCCTGGCTCAGCCGCCCGCT
GCTGCGGGGCTGGTTCTTTGAGGAATTTGTCCCAGGCGTCAAACGCTACCTGCGCCGAAGCTGCCTGCAG
CAGAAGGCCGTGCTGCTGGTGGCCCACCCGCCCTGCCCAAGCCCAGCTGCCAGTATGCCCGCCCTGGACA
GCGAGGATGCCCCCGTGCGGTGCAGGCCGGAGCCCCTCGGTCCCCCGGAGGAGCTGCAGACACCGGATGG
CGCTGTGCGGGTGCTGTTCCTGTCCAAAGGCAGCAGCCGGGCACATATCCCCGCACCGCTGGAGCAGGGC
GTGGTGGCCGCCTTCAAACAGCTGTACAAGCGCGAGCTGCTGCGACTGGCTGTGTCCTGCGCCAGCGGCT
CCCCGCTGGACTTCATGCGCAGCTTCATGCTCAAGGACATGCTCTACCTGGCTGGCCTCTCCTGGGACCT
GGTGCAGGCGGGCAGCATTGAGCGCTGCTGGCTGCTGGGCCTGCGGGCTGCCTTCGAGCCCCGGCCCGGC
GAGGACAGTGCTGGGCAGCCGGCCCAGGCCGAGGAAGCCGCCGAGCACAGCAGGGTGCTCAGCGACCTCA
CCCACCTGGCGGCTCTGGCCTACAAGTGCCTGGCTCCGGAGGAGGTTGCGGAGTGGCTGCACCTGGACGA
TGATGGGGGTCCGCCCGAGGGCTGCAGGGAGGAGGTGGGCCCAGCCCTGCCCCCTGCAGCGCCTCCGGCC
CCAGCCAGTCTGCCCTCTGCCATGGGGGGCGGAGAGGACGAGGAGGAGGCCACCGACTATGGAGGGACCT
CAGTGCCGACTGCCGGGGAGGCCGTGCGGGGGCTAGAAACAGCTCTGCGGTGGCTGGAGAACCAGGACCC
CAGAGAGGTGGGGCCACTGAGGCTGGTGCAGTTGCGCTCACTCATCAGCATGGCCCGGAGGCTGGGGGGC
ATCGGGCATACCCCAGCAGGCCCCTATGACGGTGTGTGA

Translation (642 aa):
MYPAGPPAGPVPRRGRRPLPGPPAPAPAPVPAARPPPPAPGPRPRVAVKMAFRKAYSIKDKLQAIERVKG
GERQASVCRDFGVPGGTLRGWLKDEPKLRWFLEQLGGEVGTQRKKMRLANEEEIDRAVYAWFLALRQHGV
PLSGPLIQAQAEAFARQIYGPECTFKASHGWFWRWQKRHGISSQRFYGEAGPPAPSPAPGPPVKEEPALP
SGAGPLPDRAPAPPPPAEGGYGDEQIYSASVTGLYWKLLPEQAAPPGAGDPGAGGCGRRWRGDRVTVLLA
ANLTGSHKLKPLVIGRLPDPPSLRHHNQDKFPASYRYSPDAWLSRPLLRGWFFEEFVPGVKRYLRRSCLQ
QKAVLLVAHPPCPSPAASMPALDSEDAPVRCRPEPLGPPEELQTPDGAVRVLFLSKGSSRAHIPAPLEQG
VVAAFKQLYKRELLRLAVSCASGSPLDFMRSFMLKDMLYLAGLSWDLVQAGSIERCWLLGLRAAFEPRPG
EDSAGQPAQAEEAAEHSRVLSDLTHLAALAYKCLAPEEVAEWLHLDDDGGPPEGCREEVGPALPPAAPPA
PASLPSAMGGGEDEEEATDYGGTSVPTAGEAVRGLETALRWLENQDPREVGPLRLVQLRSLISMARRLGG
IGHTPAGPYDGV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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