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Report for CCDS24518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24518.1 Public Mus musculus 11 Snrnp25 23 108 98 CCDS HistoryNCBI Gene:78372Re-query CCDS DB by CCDS ID:24518.1Re-query CCDS DB by GeneID:78372See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24518.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039601.9 ENSMUSP00000046654.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039601.9Link to Ensembl Protein Viewer:ENSMUSP00000046654.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000039601Re-query CCDS DB by Protein ID:ENSMUSP00000046654
Original member Current member NCBI NM_030093.3 NP_084369.2 Accepted alive Link to Nucleotide Sequence:NM_030093.3Link to Protein Sequence:NP_084369.2Re-query CCDS DB by Nucleotide ID:NM_030093Re-query CCDS DB by Protein ID:NP_084369Link to BLAST:NP_084369.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084369.2 123 Q8VIK1 123 100% 0 0

Chromosomal Locations for CCDS 24518.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 32205622 32205663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32206960 32207050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32207557 32207662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32208334 32208408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32208685 32208742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGTGGTGCAAGACCCGCTGCTCTGCGACCTTCCGATCCAGGTTACTCTAGAAGAGGTCAACTCCCAGA
TT
GCACTGGAATATGGCCAGGCGATGACTGTCCGTGTGTGCAAGATGGATGGAGAGGTAATGCCTGTGGT
C
GTCGTACAGAATGCCACGGTCCTGGACCTGAAGAAGGCTATCCAGAGATACGTGCAGCTCAAGCAGGAG
CGG
GAAGGCGGCGTTCAGCACATCAGCTGGTCCTATGTATGGCGGACATACCATCTGACCTCAGCTGGGG
AG
AAGCTCACAGAGGACAGGAAGAAGCTCAGAGATTATGGCATCCGGAACCGAGATGAGGTTTCCTTTAT
C
AAGAAGCTTAGGCAAAAGTGA


Translation (123 aa):
MVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQE
R
EGGVQHIS
WSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLRQK



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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