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Report for CCDS4487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4487.1 Public Homo sapiens 6 FAM50B 24 110 108 CCDS HistoryNCBI Gene:26240Re-query CCDS DB by CCDS ID:4487.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4487.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380274.2 ENSP00000369627.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380274.2Link to Ensembl Protein Viewer:ENSP00000369627.1Re-query CCDS DB by Nucleotide ID:ENST00000380274Re-query CCDS DB by Protein ID:ENSP00000369627
Original member Current member EBI ENST00000648326.1 ENSP00000496837.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000648326.1Link to Ensembl Protein Viewer:ENSP00000496837.1Re-query CCDS DB by Nucleotide ID:ENST00000648326Re-query CCDS DB by Protein ID:ENSP00000496837
Original member Current member NCBI NM_012135.3 NP_036267.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012135.3Link to Protein Sequence:NP_036267.1Re-query CCDS DB by Nucleotide ID:NM_012135Re-query CCDS DB by Protein ID:NP_036267Link to BLAST:NP_036267.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036267.1 325 Q9Y247 325 100% 0 0

Chromosomal Locations for CCDS 4487.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 3849812 3850789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGCGCAGTACAAGGGCACCATGCGCGAGGCAGGCCGTGCCATGCACCTCCTCAAGAAGCGCGAAAGGC
AGCGGGAGCAGATGGAGGTGCTGAAGCAGCGCATCGCCGAGGAGACCATCCTCAAGTCGCAGGTGGACAA
GAGGTTCTCGGCGCATTACGACGCCGTGGAGGCCGAGCTGAAGTCCAGCACGGTGGGCCTGGTGACCCTG
AACGACATGAAGGCCCGGCAGGAGGCCCTGGTCAGGGAGCGCGAGCGGCAGCTGGCCAAGCGCCAGCACC
TGGAGGAGCAGCGGCTGCAGCAGGAGCGGCAGCGGGAGCAGGAGCAGCGGCGCGAGCGCAAGCGTAAGAT
CTCCTGCCTGTCCTTTGCACTAGACGACCTCGATGACCAGGCCGACGCGGCCGAGGCCAGGCGCGCCGGA
AACCTGGGCAAGAACCCCGACGTGGACACCAGCTTCCTGCCAGACCGCGACCGCGAGGAGGAGGAGAACC
GGCTCCGAGAGGAGCTGCGCCAAGAGTGGGAGGCGCAGCGCGAGAAAGTGAAGGACGAGGAGATGGAGGT
CACCTTCAGCTACTGGGACGGCTCGGGCCACCGGCGCACGGTGCGGGTGCGCAAGGGCAACACGGTGCAG
CAGTTCCTGAAGAAGGCGCTGCAGGGGCTGCGCAAGGACTTCCTGGAGCTGCGCTCCGCCGGCGTGGAGC
AGCTCATGTTCATCAAGGAGGACCTCATCCTGCCGCACTACCACACCTTCTACGACTTCATCATCGCCAG
GGCGAGGGGCAAGAGCGGGCCGCTCTTCAGCTTCGATGTGCACGATGACGTGCGCCTGCTCAGCGACGCC
ACCATGGAGAAGGACGAGTCGCACGCGGGCAAGGTGGTGCTGCGCAGCTGGTACGAGAAGAACAAGCACA
TCTTCCCCGCCAGCCGCTGGGAGGCCTATGACCCCGAGAAGAAGTGGGACAAGTACACCATCCGCTAA

Translation (325 aa):
MAQYKGTMREAGRAMHLLKKRERQREQMEVLKQRIAEETILKSQVDKRFSAHYDAVEAELKSSTVGLVTL
NDMKARQEALVRERERQLAKRQHLEEQRLQQERQREQEQRRERKRKISCLSFALDDLDDQADAAEARRAG
NLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAQREKVKDEEMEVTFSYWDGSGHRRTVRVRKGNTVQ
QFLKKALQGLRKDFLELRSAGVEQLMFIKEDLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDA
TMEKDESHAGKVVLRSWYEKNKHIFPASRWEAYDPEKKWDKYTIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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