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Report for CCDS38181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38181.1 Public Mus musculus 2 Creb3l1 23 108 98 CCDS HistoryNCBI Gene:26427Re-query CCDS DB by CCDS ID:38181.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38181.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028663.4 ENSMUSP00000028663.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028663.4Link to Ensembl Protein Viewer:ENSMUSP00000028663.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028663Re-query CCDS DB by Protein ID:ENSMUSP00000028663
Original member Current member NCBI NM_011957.2 NP_036087.2 Accepted alive Link to Nucleotide Sequence:NM_011957.2Link to Protein Sequence:NP_036087.2Re-query CCDS DB by Nucleotide ID:NM_011957Re-query CCDS DB by Protein ID:NP_036087Link to BLAST:NP_036087.2

Chromosomal Locations for CCDS 38181.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 91982971 91983007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91983165 91983432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91986161 91986287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91987036 91987135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91990707 91990775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91990909 91990967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91991126 91991275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91991887 91992044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91993271 91993349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91995257 91995441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92001845 92002073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92024004 92024105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGGACGCCGTCTTGGAACCTTTCCCGGCCGACAGGCTGTTCCCGGGATCCAGCTTCCTGGACTTGGGAG
ACCTGAATGAGTCGGATTTCCTCAACAATGCGCACTTCCCGGAGCACCTGGACCACTTTGTGGAGAACAT
GGAGGACTTCTCCAATGACCTGTTCAGCAGTTTCTTTGATGACCCTGTGCTGGACGAGAAGAGTGCTCTG
CTGGACATGGAACTGGACTCCCCCGCTCCAGGCATCCAGGCTGAGCACAGCTACTCCCTGAGTGGGGATT
CTGCACCCCAGAGCCCCCTTGTGCCTGTCAAGATGGAGGACACCACTCAAGATGTGGAACACGGAGCGTG
GGCCCTGGGAAACAAGCTGTGCTCCATCATGGTGAAGCAGGAGCAGAGCCCGGAGCTGCCTGTAGATCCC
CTGGCTGCCTCCTCTGCCATGGCTGCTGCCGCCGCCATGGCCACCCCACCACTGCTGGGCCTCAGCCCCA
TGCCCCGGCTGCCCATCCCTCACCAGGCCCCAGGAGAAATGACTCAGCTGCCAGTGATCAAAGCAGAGCC
CCCAGAAATGAGCCAGTTTCTCAAAGTGACACCAGAGGACCTCGTACAGATGCCTCCAACACCCCCCAGC
AGCCATGGCAGTGACAGTGACGGCTCCCAGAGTCCCCGCTCTCTTCCCCCCTCCAGCCCTGTCCGGCCCA
TGGCCCGCTCCTCCACGGCCATTTCCACCTCTCCGCTCCTCACTGCCCCTCACAAACTGCAGGGGACATC
AGGGCCACTGCTCTTGACAGAAGAGGAGAAGCGGACCTTGATCGCGGAGGGTTACCCTATCCCCACCAAG
CTCCCCCTCACCAAGGCTGAGGAGAAGGCCTTGAAGAGAGTACGCAGGAAAATTAAGAACAAGATTTCTG
CCCAGGAGAGCCGCCGCAAGAAGAAGGAGTATGTGGAATGTCTAGAAAAGAAGGTGGAGACATATACATC
AGAGAACAATGAGCTGTGGAAGAAAGTGGAAACCCTAGAGACTGCCAACAGGACCCTGCTCCAGCAGCTG
CAGAAACTCCAGACTCTGGTCACCAGCAAGATCTCCAGACCGTACAAGATGGCAGCCACGCAGACCGGCA
CCTGCCTCATGGTGGCAGCCTTGTGCTTCGTTCTGGTGCTGGGCTCCCTTGTGCCCTGCCTTCCTGCATT
CTCTTCCGGCTCAATGACTGTGAAAGAAGACCCTATCGCAGCTGACAGTGTCTATGCAGCCAGTCAGATG
CCTTCCCGAAGCCTACTGTTCTACGATGATGGGGCAGGCTCATGGGAAGATGGCCGAGGTGCTCTACTGC
CTGTGGAGCCCCCAGAAGGCTGGGAGCTCAAACCCGGGGGTCCAGCAGAGCAGAGGCCCCAGGACCACCT
CCGACATGACCGTGCAGACAGCATCCATGAGACCACCAAGTACTTGAGAGAGACCTGGCCAGAGGACACT
GATGACAACGGCACCAGCCCCAACTTCTCCCACCCCAAGGAGTGGTTCCATGACAGGGATCTGGGCCCCA
ACACCACCATCAAACTCTCCTAG

Translation (520 aa):
MDAVLEPFPADRLFPGSSFLDLGDLNESDFLNNAHFPEHLDHFVENMEDFSNDLFSSFFDDPVLDEKSAL
LDMELDSPAPGIQAEHSYSLSGDSAPQSPLVPVKMEDTTQDVEHGAWALGNKLCSIMVKQEQSPELPVDP
LAASSAMAAAAAMATPPLLGLSPMPRLPIPHQAPGEMTQLPVIKAEPPEMSQFLKVTPEDLVQMPPTPPS
SHGSDSDGSQSPRSLPPSSPVRPMARSSTAISTSPLLTAPHKLQGTSGPLLLTEEEKRTLIAEGYPIPTK
LPLTKAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETYTSENNELWKKVETLETANRTLLQQL
QKLQTLVTSKISRPYKMAATQTGTCLMVAALCFVLVLGSLVPCLPAFSSGSMTVKEDPIAADSVYAASQM
PSRSLLFYDDGAGSWEDGRGALLPVEPPEGWELKPGGPAEQRPQDHLRHDRADSIHETTKYLRETWPEDT
DDNGTSPNFSHPKEWFHDRDLGPNTTIKLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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