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Report for CCDS86023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86023.1 Public Homo sapiens 1 OR10J1 24 110 108 CCDS HistoryNCBI Gene:26476Re-query CCDS DB by CCDS ID:86023.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 86023.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000423932.6 ENSP00000399078.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000423932.6Link to Ensembl Protein Viewer:ENSP00000399078.4Re-query CCDS DB by Nucleotide ID:ENST00000423932Re-query CCDS DB by Protein ID:ENSP00000399078
Original member Current member EBI ENST00000642080.1 ENSP00000493228.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642080.1Link to Ensembl Protein Viewer:ENSP00000493228.1Re-query CCDS DB by Nucleotide ID:ENST00000642080Re-query CCDS DB by Protein ID:ENSP00000493228
Original member Current member NCBI NM_001363557.2 NP_001350486.1 Accepted alive Link to Nucleotide Sequence:NM_001363557.2Link to Protein Sequence:NP_001350486.1Re-query CCDS DB by Nucleotide ID:NM_001363557Re-query CCDS DB by Protein ID:NP_001350486Link to BLAST:NP_001350486.1
Original member Current member NCBI NM_001363558.2 NP_001350487.1 Accepted alive Link to Nucleotide Sequence:NM_001363558.2Link to Protein Sequence:NP_001350487.1Re-query CCDS DB by Nucleotide ID:NM_001363558Re-query CCDS DB by Protein ID:NP_001350487Link to BLAST:NP_001350487.1
Original member Current member NCBI NM_012351.3 NP_036483.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012351.3Link to Protein Sequence:NP_036483.3Re-query CCDS DB by Nucleotide ID:NM_012351Re-query CCDS DB by Protein ID:NP_036483Link to BLAST:NP_036483.3

Chromosomal Locations for CCDS 86023.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 159439792 159440721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGAAAAGAGAGAACTTTACTCTCATCACTGACTTTGTTTTCCAAGGTTTCTCTAGCTTCCATGAGCAGC
AGATCACCCTTTTTGGCGTGTTCCTTGCACTATACATCTTAACCTTAGCAGGCAATATCATCATTGTGAC
CATCATCCGAATGGATCTTCATCTTCACACACCCATGTACTTCTTCCTGAGCATGCTGTCCACTTCAGAG
ACTGTATATACATTGGTCATTCTCCCAAGAATGCTCTCCAGCCTCGTAGGTATGAGCCAGCCCATATCAT
TGGCAGGGTGTGCCACACAGATGTTCTTTTTTGTAACCTTTGGCATCACTAACTGCTTCCTGCTCACAGC
AATGGGATATGACCGCTATGTGGCCATCTGCAACCCCCTGAGATACATGGTTATTATGAACAAGAGGCTG
CGTATCCAACTTGTCCTGGGGGCCTGCAGCATTGGGCTGATTGTAGCAATAACGCAAGTGACATCTGTAT
TCAGGTTACCCTTCTGTGCTAGAAAGGTGCCCCACTTCTTCTGTGACATCCGCCCTGTGATGAAGCTCTC
CTGCATTGACACCACTGTCAATGAAATCCTGACTTTGATTATCAGTGTGCTGGTGCTTGTTGTACCTATG
GGTCTGGTTTTCATTTCTTATGTTCTCATTATCTCTACAATCCTCAAGATTGCTTCAGTTGAGGGCCGGA
AGAAGGCTTTTGCCACCTGTGCATCCCACCTCACTGTGGTCATTGTCCACTACAGCTGTGCCTCCATTGC
CTACCTCAAGCCCAAGTCAGAGAACACCAGAGAACATGACCAGCTGATCTCGGTGACCTACACTGTCATC
ACTCCCCTACTGAACCCTGTGGTATACACCCTGAGAAATAAAGAGGTCAAAGATGCTCTGTGCAGGGCTG
TTGGTGGGAAGTTTTCCTGA

Translation (309 aa):
MKRENFTLITDFVFQGFSSFHEQQITLFGVFLALYILTLAGNIIIVTIIRMDLHLHTPMYFFLSMLSTSE
TVYTLVILPRMLSSLVGMSQPISLAGCATQMFFFVTFGITNCFLLTAMGYDRYVAICNPLRYMVIMNKRL
RIQLVLGACSIGLIVAITQVTSVFRLPFCARKVPHFFCDIRPVMKLSCIDTTVNEILTLIISVLVLVVPM
GLVFISYVLIISTILKIASVEGRKKAFATCASHLTVVIVHYSCASIAYLKPKSENTREHDQLISVTYTVI
TPLLNPVVYTLRNKEVKDALCRAVGGKFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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