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Report for CCDS50897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50897.1 Public Mus musculus 3 Ankrd50 23 108 98 CCDS HistoryNCBI Gene:99696Re-query CCDS DB by CCDS ID:50897.1Re-query CCDS DB by GeneID:99696See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50897.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120875.7 ENSMUSP00000113349.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120875.7Link to Ensembl Protein Viewer:ENSMUSP00000113349.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120875Re-query CCDS DB by Protein ID:ENSMUSP00000113349
Original member Current member NCBI NM_001167883.1 NP_001161355.1 Accepted alive Link to Nucleotide Sequence:NM_001167883.1Link to Protein Sequence:NP_001161355.1Re-query CCDS DB by Nucleotide ID:NM_001167883Re-query CCDS DB by Protein ID:NP_001161355Link to BLAST:NP_001161355.1

Chromosomal Locations for CCDS 50897.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 38452417 38452505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38462900 38463129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38482691 38483202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGACTAATCCTTGGGAAGAGAAAGTCTGCAAAATGGCCCAGACGAGTCTGCTGCAAGGGAAACAGTTTT
ACTGTCGAGAATGGGTTTTCCACAAACTTCAGCACTGCCTCCAGGAGAAATGGAGCTGCTGTTCGGGTCC
AGCCACTGCACAGTCCCTCGTCGGCAACGCTGGGAATAATGCTAGTGCCATCTCTGGAAAGGGGGCCTCC
TGGGGCGTGTTGCTGGTAGGAGGGCCTGGCAGTGGGAAGACGGCCCTGTGCACTGAGCTCCTGTGGCCAA
GTTCGCCCGCCAGCCTGCAGAGAGGTCTGCATCGCCAGGCTTTGGCTTTCCACTTCTGCAAAGCCCAGGA
CTCAGACACTTTGTGTGTTGGAGGGTTTATCAGAGGTCTGGTAGCCCAGATCTGCCAAAGTGGACTCCTC
CAAGGTTATGAGGACAAGCTAAGAGATCCAGCCGTCCAAAGTCTCCTCGAGCCTGGAGAGTGTGAGAGGA
ACCCAGCGGAAGCATTTAAAAGGTGTGTGCTGCTCCCACTCCTGGGGATGAAGCCACCCCCGCAGAGCCT
CTACCTGTTGGTTGACTCCGTGGACGAAGGCTGCAATGTGGTGGAAGGGGAGCAGACATCACCCAGCCTC
TCGGGGACTGTGGCAGAGCTCTTGGCTGGTCACCACGAGTTCTTTCCCCCATGGCTCCTGCTTCTCTGCT
CTGCCCGAAAGCAGAGCAGAGCTGTCACTAAAATGTTCAGTGGTTCCAGTTGTATGAGACAGAAGGCATT
GTGGTTGGAGGAGCCGCTCAGCTGCCAGATGGAAGCCAGATGCCTGAGGGCGTGCTGCTGA

Translation (276 aa):
MTNPWEEKVCKMAQTSLLQGKQFYCREWVFHKLQHCLQEKWSCCSGPATAQSLVGNAGNNASAISGKGAS
WGVLLVGGPGSGKTALCTELLWPSSPASLQRGLHRQALAFHFCKAQDSDTLCVGGFIRGLVAQICQSGLL
QGYEDKLRDPAVQSLLEPGECERNPAEAFKRCVLLPLLGMKPPPQSLYLLVDSVDEGCNVVEGEQTSPSL
SGTVAELLAGHHEFFPPWLLLLCSARKQSRAVTKMFSGSSCMRQKALWLEEPLSCQMEARCLRACC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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