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Report for CCDS3298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3298.1 Public Homo sapiens 3 IL1RAP 24 110 108 CCDS HistoryNCBI Gene:3556Re-query CCDS DB by CCDS ID:3298.1Re-query CCDS DB by GeneID:3556See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3298.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000072516.7 ENSP00000072516.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000072516.7Link to Ensembl Protein Viewer:ENSP00000072516.3Re-query CCDS DB by Nucleotide ID:ENST00000072516Re-query CCDS DB by Protein ID:ENSP00000072516
Original member Current member EBI ENST00000447382.6 ENSP00000390541.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000447382.6Link to Ensembl Protein Viewer:ENSP00000390541.1Re-query CCDS DB by Nucleotide ID:ENST00000447382Re-query CCDS DB by Protein ID:ENSP00000390541
Original member Current member EBI ENST00000439062.6 ENSP00000401132.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439062.6Link to Ensembl Protein Viewer:ENSP00000401132.1Re-query CCDS DB by Nucleotide ID:ENST00000439062Re-query CCDS DB by Protein ID:ENSP00000401132
Original member Current member EBI ENST00000412504.6 ENSP00000412053.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000412504.6Link to Ensembl Protein Viewer:ENSP00000412053.2Re-query CCDS DB by Nucleotide ID:ENST00000412504Re-query CCDS DB by Protein ID:ENSP00000412053
Original member Current member NCBI NM_001167928.2 NP_001161400.1 Accepted alive Link to Nucleotide Sequence:NM_001167928.2Link to Protein Sequence:NP_001161400.1Re-query CCDS DB by Nucleotide ID:NM_001167928Re-query CCDS DB by Protein ID:NP_001161400Link to BLAST:NP_001161400.1
Original member Current member NCBI NM_001167929.2 NP_001161401.1 Accepted alive Link to Nucleotide Sequence:NM_001167929.2Link to Protein Sequence:NP_001161401.1Re-query CCDS DB by Nucleotide ID:NM_001167929Re-query CCDS DB by Protein ID:NP_001161401Link to BLAST:NP_001161401.1
Original member Current member NCBI NM_001364881.2 NP_001351810.1 Accepted alive Link to Nucleotide Sequence:NM_001364881.2Link to Protein Sequence:NP_001351810.1Re-query CCDS DB by Nucleotide ID:NM_001364881Re-query CCDS DB by Protein ID:NP_001351810Link to BLAST:NP_001351810.1
Original member Current member NCBI NM_002182.4 NP_002173.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002182.4Link to Protein Sequence:NP_002173.1Re-query CCDS DB by Nucleotide ID:NM_002182Re-query CCDS DB by Protein ID:NP_002173Link to BLAST:NP_002173.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161400.1 570 Q9NPH3-1 570 100% 0 0
NP_001161401.1 570 Q9NPH3-1 570 100% 0 0
NP_001351810.1 570 Q9NPH3-1 570 100% 0 0
NP_002173.1 570 Q9NPH3-1 570 100% 0 0

Chromosomal Locations for CCDS 3298.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 190564290 190564353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190604128 190604413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190608995 190609181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190620275 190620440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190623344 190623415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190627323 190627449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190629350 190629498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190644248 190644397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190645699 190645842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190648338 190648705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGACACTTCTGTGGTGTGTAGTGAGTCTCTACTTTTATGGAATCCTGCAAAGTGATGCCTCAGAACGCT
GCGATGACTGGGGACTAGACACCATGAGGCAAATCCAAGTGTTTGAAGATGAGCCAGCTCGCATCAAGTG
CCCACTCTTTGAACACTTCTTGAAATTCAACTACAGCACAGCCCATTCAGCTGGCCTTACTCTGATCTGG
TATTGGACTAGGCAGGACCGGGACCTTGAGGAGCCAATTAACTTCCGCCTCCCCGAGAACCGCATTAGTA
AGGAGAAAGATGTGCTGTGGTTCCGGCCCACTCTCCTCAATGACACTGGCAACTATACCTGCATGTTAAG
GAACACTACATATTGCAGCAAAGTTGCATTTCCCTTGGAAGTTGTTCAAAAAGACAGCTGTTTCAATTCC
CCCATGAAACTCCCAGTGCATAAACTGTATATAGAATATGGCATTCAGAGGATCACTTGTCCAAATGTAG
ATGGATATTTTCCTTCCAGTGTCAAACCGACTATCACTTGGTATATGGGCTGTTATAAAATACAGAATTT
TAATAATGTAATACCCGAAGGTATGAACTTGAGTTTCCTCATTGCCTTAATTTCAAATAATGGAAATTAC
ACATGTGTTGTTACATATCCAGAAAATGGACGTACGTTTCATCTCACCAGGACTCTGACTGTAAAGGTAG
TAGGCTCTCCAAAAAATGCAGTGCCCCCTGTGATCCATTCACCTAATGATCATGTGGTCTATGAGAAAGA
ACCAGGAGAGGAGCTACTCATTCCCTGTACGGTCTATTTTAGTTTTCTGATGGATTCTCGCAATGAGGTT
TGGTGGACCATTGATGGAAAAAAACCTGATGACATCACTATTGATGTCACCATTAACGAAAGTATAAGTC
ATAGTAGAACAGAAGATGAAACAAGAACTCAGATTTTGAGCATCAAGAAAGTTACCTCTGAGGATCTCAA
GCGCAGCTATGTCTGTCATGCTAGAAGTGCCAAAGGCGAAGTTGCCAAAGCAGCCAAGGTGAAGCAGAAA
GTGCCAGCTCCAAGATACACAGTGGAACTGGCTTGTGGTTTTGGAGCCACAGTCCTGCTAGTGGTGATTC
TCATTGTTGTTTACCATGTTTACTGGCTAGAGATGGTCCTATTTTACCGGGCTCATTTTGGAACAGATGA
AACCATTTTAGATGGAAAAGAGTATGATATTTATGTATCCTATGCAAGGAATGCGGAAGAAGAAGAATTT
GTATTACTGACCCTCCGTGGAGTTTTGGAGAATGAATTTGGATACAAGCTGTGCATCTTTGACCGAGACA
GTCTGCCTGGGGGAATTGTCACAGATGAGACTTTGAGCTTCATTCAGAAAAGCAGACGCCTCCTGGTTGT
TCTAAGCCCCAACTACGTGCTCCAGGGAACCCAAGCCCTCCTGGAGCTCAAGGCTGGCCTAGAAAATATG
GCCTCTCGGGGCAACATCAACGTCATTTTAGTACAGTACAAAGCTGTGAAGGAAACGAAGGTGAAAGAGC
TGAAGAGGGCTAAGACGGTGCTCACGGTCATTAAATGGAAAGGGGAAAAATCCAAGTATCCACAGGGCAG
GTTCTGGAAGCAGCTGCAGGTGGCCATGCCAGTGAAGAAAAGTCCCAGGCGGTCTAGCAGTGATGAGCAG
GGCCTCTCGTATTCATCTTTGAAAAATGTATGA

Translation (570 aa):
MTLLWCVVSLYFYGILQSDASERCDDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIW
YWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNS
PMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNY
TCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEV
WWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK
VPAPRYTVELACGFGATVLLVVILIVVYHVYWLEMVLFYRAHFGTDETILDGKEYDIYVSYARNAEEEEF
VLLTLRGVLENEFGYKLCIFDRDSLPGGIVTDETLSFIQKSRRLLVVLSPNYVLQGTQALLELKAGLENM
ASRGNINVILVQYKAVKETKVKELKRAKTVLTVIKWKGEKSKYPQGRFWKQLQVAMPVKKSPRRSSSDEQ
GLSYSSLKNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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