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Report for CCDS80218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80218.1 Public Mus musculus 5 Lhfpl3 23 108 98 CCDS HistoryNCBI Gene:269629Re-query CCDS DB by CCDS ID:80218.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80218.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000197992.1 ENSMUSP00000143576.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197992.1Link to Ensembl Protein Viewer:ENSMUSP00000143576.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197992Re-query CCDS DB by Protein ID:ENSMUSP00000143576
Original member Current member NCBI NM_001081231.3 NP_001074700.2 Accepted alive Link to Nucleotide Sequence:NM_001081231.3Link to Protein Sequence:NP_001074700.2Re-query CCDS DB by Nucleotide ID:NM_001081231Re-query CCDS DB by Protein ID:NP_001074700Link to BLAST:NP_001074700.2
Original member Current member NCBI NM_001359998.2 NP_001346927.1 Accepted alive Link to Nucleotide Sequence:NM_001359998.2Link to Protein Sequence:NP_001346927.1Re-query CCDS DB by Nucleotide ID:NM_001359998Re-query CCDS DB by Protein ID:NP_001346927Link to BLAST:NP_001346927.1

Chromosomal Locations for CCDS 80218.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 22746193 22746625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23102412 23102648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23221865 23221881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGCCCGGAGCCGCCGCCGCCGCCGCCGCGATGCTCCCGGCTCAGGAGGCTGCCAAGCTGTACCACACCA
ACTATGTGCGGAACTCGCGGGCCATCGGCGTGCTGTGGGCCATCTTCACCATCTGCTTTGCCATCGTCAA
TGTGGTGTGCTTCATCCAGCCCTACTGGATCGGCGACGGCGTGGACACCCCGCAAGCCGGCTATTTCGGG
CTCTTCCACTACTGCATCGGCAACGGCTTCTCCCGGGAGCTGACCTGCAGGGGTAGCTTCACGGACTTCT
CCACGCTGCCCTCGGGCGCCTTCAAAGCCGCCTCCTTCTTCATCGGCCTCTCCATGATGCTCATCATCGC
CTGCATCGTTTGCTTTACCCTCTTCTTCTTCTGCAACACAGCCACCGTGTACAAGATCTGTGCTTGGATG
CAGCTCACCTCCGCTGCCTGCCTTGTCCTTGGCTGTATGATTTTCCCTGATGGCTGGGATTCAGACGAAG
TAAAACGGATGTGCGGAGAGAAGACAGACAAGTACACTCTTGGGGCCTGCTCGGTCCGCTGGGCGTACAT
CCTGGCTATCATCGGAATCTTAGACGCCCTGATCCTCTCGTTTCTAGCGTTTGTGCTTGGGAACCGACAA
GACAGCTTGATGGCAGAGGAACTGAAAGCAGAAAACAAAGATGATGGAAATGCTTAA

Translation (228 aa):
MPGAAAAAAAMLPAQEAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFIQPYWIGDGVDTPQAGYFG
LFHYCIGNGFSRELTCRGSFTDFSTLPSGAFKAASFFIGLSMMLIIACIVCFTLFFFCNTATVYKICAWM
QLTSAACLVLGCMIFPDGWDSDEVKRMCGEKTDKYTLGACSVRWAYILAIIGILDALILSFLAFVLGNRQ
DSLMAEELKAENKDDGNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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