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Report for CCDS20507.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20507.1 Public Mus musculus 6 Clec4a1 23 108 98 CCDS HistoryNCBI Gene:269799Re-query CCDS DB by CCDS ID:20507.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20507.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060484.8 ENSMUSP00000062441.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060484.8Link to Ensembl Protein Viewer:ENSMUSP00000062441.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000060484Re-query CCDS DB by Protein ID:ENSMUSP00000062441
Original member Current member NCBI NM_199311.2 NP_955015.1 Accepted alive Link to Nucleotide Sequence:NM_199311.2Link to Protein Sequence:NP_955015.1Re-query CCDS DB by Nucleotide ID:NM_199311Re-query CCDS DB by Protein ID:NP_955015Link to BLAST:NP_955015.1

Chromosomal Locations for CCDS 20507.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 122921974 122922079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122924717 122924830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122927964 122928065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122930677 122930828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122932149 122932264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122933778 122933925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGCATTACCAAACATTTATACTGACGTGAACTTCAAAAATCAACCTGTTTCCTCAGGCCTCATCTCAG
ACTCGTCTTCATGTACCGTCTCAGACTCGTCTTCAGCTCTCCCAAAGAAGACCACTATTCACAAAAGTAA
CCCTGGCTTTCCCAGGCTGCTTCTTGCCTTGTGGATATTTTTCCTGCTGTTGGCAATCTTATTCTCTGTT
GCTCTGATCATTTTATTTCAAATGTATTCTGATCTCCTTGAAGAAAAATATACTCTAGAACGACTGAATC
ACGCAAGATTGCATTGTGTAAAAAACCACTCGTCTGTAGAAGACAAAGTCTGGAGCTGTTGTCCAAAGAA
TTGGAAGCCATTTGATTCCCACTGCTACTTCACTTCCCGTGACACTGCATCCTGGAGTAAGAGTGAAGAG
AAGTGCTCCCTCAGGGGTGCTCATCTGCTGGTGATCCAGAGCCAGGAAGAGCAGGATTTCATCACCAACA
CTCTGAACCCTCGTGCTGCTTATTATGTGGGGCTGTCAGATCCAAAGGGCCATGGACAATGGCAGTGGGT
TGATCAGACACCATATGATCAAAATGCCACATCCTGGCACTCAGATGAACCCAGTGGCAACACTGAATTT
TGTGTTGTGCTAAGTTATCATCCAAACGTTAAAGGATGGGGCTGGAGTGTCGCCCCTTGTGATGGTGATC
ATAGGTTGATTTGTGAGATGAGGCAGCTCTATGTATGA

Translation (245 aa):
MALPNIYTDVNFKNQPVSSGLISDSSSCTVSDSSSALPKKTTIHKSNPGFPRLLLALWIFFLLLAILFSV
ALIILFQMYSDLLEEKYTLERLNHARLHCVKNHSSVEDKVWSCCPKNWKPFDSHCYFTSRDTASWSKSEE
KCSLRGAHLLVIQSQEEQDFITNTLNPRAAYYVGLSDPKGHGQWQWVDQTPYDQNATSWHSDEPSGNTEF
CVVLSYHPNVKGWGWSVAPCDGDHRLICEMRQLYV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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