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Report for CCDS13946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13946.1 Public Homo sapiens 22 CYTH4 24 110 108 CCDS HistoryNCBI Gene:27128Re-query CCDS DB by CCDS ID:13946.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13946.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000248901.11 ENSP00000248901.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000248901.11Link to Ensembl Protein Viewer:ENSP00000248901.6Re-query CCDS DB by Nucleotide ID:ENST00000248901Re-query CCDS DB by Protein ID:ENSP00000248901
Original member Current member NCBI NM_013385.5 NP_037517.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013385.5Link to Protein Sequence:NP_037517.1Re-query CCDS DB by Nucleotide ID:NM_013385Re-query CCDS DB by Protein ID:NP_037517Link to BLAST:NP_037517.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037517.1 394 Q9UIA0 394 100% 0 0

Chromosomal Locations for CCDS 13946.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 37282570 37282588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37292621 37292703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37294660 37294724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37295999 37296065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37297564 37297682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37299226 37299306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37300907 37301019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37303254 37303402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37309212 37309323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37310988 37311064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37311456 37311527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37312020 37312174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37313439 37313511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1185 nt):
ATGGACCTGTGCCACCCAGAGCCCGCGGAGCTGAGCAGCGGGGAGACGGAAGAGTTACAGAGGATCAAGT
GGCACCGAAAGCAGCTCCTGGAGGACATCCAGAAGCTGAAGGATGAGATTGCAGATGTGTTTGCCCAAAT
CGACTGCTTCGAGAGTGCGGAGGAGAGCCGGATGGCCCAGAAGGAGAAGGAGCTGTGTATTGGGCGCAAG
AAGTTCAACATGGACCCCGCCAAGGGTATCCAGTATTTCATTGAGCACAAGCTGCTGACCCCTGACGTCC
AGGACATTGCACGGTTCCTGTATAAAGGCGAGGGCCTCAACAAGACAGCCATTGGTACCTACCTGGGGGA
GAGGGATCCCATCAACCTGCAGGTCCTCCAGGCCTTCGTGGACTGCCACGAGTTCGCCAACCTCAACCTC
GTCCAGGCCCTCAGGCAGTTCCTGTGGAGCTTCCGGCTGCCGGGCGAGGCCCAGAAGATAGACCGGATGA
TGGAGGCCTTTGCCACTCGATACTGCCTCTGCAACCCAGGCGTCTTCCAGTCCACAGACACCTGCTACGT
GTTGTCCTTCTCCATCATCATGCTCAACACCAGCCTCCACAATCCCAACGTCCGGGACAGGCCGCCTTTT
GAGCGCTTTGTGTCCATGAACCGCGGCATCAACAATGGTAGCGACCTGCCCGAGGACCAGCTGCGGAACC
TCTTCGACAGCATCAAGAGTGAGCCATTCTCCATCCCTGAGGACGACGGCAATGACCTCACTCACACCTT
CTTCAATCCAGACCGGGAGGGTTGGCTGCTCAAGCTAGGGGGCCGCGTGAAGACGTGGAAACGGCGCTGG
TTCATCCTGACCGACAACTGCCTCTACTACTTCGAGTTCACCACTGACAAGGAGCCACGGGGAATTATAC
CTCTTGAGAACCTCTCGGTGCAGAAGGTGGATGACCCCAAGAAGCCATTCTGCCTGGAGCTCTACAACCC
TAGCTGCCGAGGCCAGAAAATCAAGGCCTGCAAGACCGATGGCGACGGCAGGGTGGTGGAGGGCAAGCAC
GAATCGTACCGCATCTCAGCCACCAGTGCCGAGGAACGTGACCAGTGGATCGAGTCCATCCGAGCCAGCA
TCACCCGTGTCCCCTTCTACGACCTGGTCTCTACTCGGAAGAAGAAGATTGCCAGCAAGCAGTGA

Translation (394 aa):
MDLCHPEPAELSSGETEELQRIKWHRKQLLEDIQKLKDEIADVFAQIDCFESAEESRMAQKEKELCIGRK
KFNMDPAKGIQYFIEHKLLTPDVQDIARFLYKGEGLNKTAIGTYLGERDPINLQVLQAFVDCHEFANLNL
VQALRQFLWSFRLPGEAQKIDRMMEAFATRYCLCNPGVFQSTDTCYVLSFSIIMLNTSLHNPNVRDRPPF
ERFVSMNRGINNGSDLPEDQLRNLFDSIKSEPFSIPEDDGNDLTHTFFNPDREGWLLKLGGRVKTWKRRW
FILTDNCLYYFEFTTDKEPRGIIPLENLSVQKVDDPKKPFCLELYNPSCRGQKIKACKTDGDGRVVEGKH
ESYRISATSAEERDQWIESIRASITRVPFYDLVSTRKKKIASKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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