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Report for CCDS15815.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15815.1 Public Mus musculus 2 Rpl7a 23 108 98 CCDS HistoryNCBI Gene:27176Re-query CCDS DB by CCDS ID:15815.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15815.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102898.4 ENSMUSP00000099962.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102898.4Link to Ensembl Protein Viewer:ENSMUSP00000099962.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102898Re-query CCDS DB by Protein ID:ENSMUSP00000099962
Original member NCBI NM_013721.3 NP_038749.1 Updated not alive Link to Nucleotide Sequence:NM_013721.3Link to Protein Sequence:NP_038749.1Re-query CCDS DB by Nucleotide ID:NM_013721Re-query CCDS DB by Protein ID:NP_038749
Current member NCBI NM_013721.4 NP_038749.1 Accepted alive Link to Nucleotide Sequence:NM_013721.4Link to Protein Sequence:NP_038749.1Re-query CCDS DB by Nucleotide ID:NM_013721Re-query CCDS DB by Protein ID:NP_038749Link to BLAST:NP_038749.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038749.1 266 P12970 266 100% 0 0

Chromosomal Locations for CCDS 15815.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 26910828 26910830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26911006 26911126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26911422 26911571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26912019 26912159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26912366 26912445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26912671 26912801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26912988 26913057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26913165 26913269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGCCCAAAGGGAAGAAGGCCAAGGGGAAGAAGGTGGCCCCGGCCCCCGCCGTCGTCAAGAAGCAGGAGG
CCAAGAAGGTGGTCAACCCTCTGTTCGAGAAGAGGCCCAAGAACTTCGGCATTGGACAGGACATCCAGCC
CAAAAGAGATTTAACGCGCTTCGTCAAATGGCCCCGCTACATCAGACTGCAGCGGCAAAGAGCTATCCTC
TACAAGCGGCTCAAAGTCCCTCCTGCCATTAACCAGTTCACCCAGGCCCTGGACAGGCAGACAGCTACTC
AGCTGCTTAAGCTTGCCCACAAGTACAGGCCAGAGACAAAGCAAGAGAAGAAGCAAAGGCTACTGGCCCG
TGCTGAGAAGAAAGCTGCTGGCAAAGGCGACGTCCCAACTAAGAGACCACCTGTCCTCCGAGCAGGAGTC
AATACAGTCACCACCTTGGTGGAGAACAAGAAGGCTCAGCTGGTGGTGATTGCCCATGACGTAGACCCCA
TTGAGCTGGTGGTTTTCCTACCTGCTCTGTGTCGAAAGATGGGGGTGCCCTACTGCATCATCAAGGGAAA
GGCCAGGCTGGGGCACCTGGTCCACAGGAAGACATGCACCACCGTTGCCTTCACACAGGTTAACTCGGAA
GACAAGGGTGCTCTGGCTAAGCTGGTGGAAGCTATTAGGACCAATTATAATGACAGATATGACGAGATCC
GTCGCCACTGGGGAGGCAACGTCCTGGGTCCTAAGTCTGTGGCTCGAATTGCCAAGCTGGAAAAAGCAAA
GGCTAAAGAACTCGCCACTAAATTGGGTTAA

Translation (266 aa):
MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAIL
YKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGV
NTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVNSE
DKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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